View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2486_high_1 (Length: 549)

Name: NF2486_high_1
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2486_high_1
NF2486_high_1
[»] chr4 (7 HSPs)
chr4 (17-392)||(42927399-42927774)
chr4 (387-542)||(42927204-42927359)
chr4 (262-386)||(44728399-44728523)
chr4 (471-541)||(44728199-44728269)
chr4 (157-215)||(44728705-44728763)
chr4 (472-519)||(47842649-47842696)
chr4 (157-189)||(47842115-47842147)
[»] chr6 (3 HSPs)
chr6 (158-214)||(21111362-21111418)
chr6 (473-540)||(21354321-21354388)
chr6 (265-312)||(21305704-21305751)
[»] scaffold1787 (1 HSPs)
scaffold1787 (265-314)||(1279-1328)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 42927774 - 42927399
Alignment:
Q  17 ctattataggactatagattaatacttcttaattagtgttaccatacatgaatttttcaaacaaagtaatgctaactaactagttgatgttacttagaaa 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42927774 ctattgtaggactatagattaatacttcttaattagtgttaccatacatgaatttttcaaacaaagtaatgctaactaattagttgatgttacttagaaa 42927675  T
Q  117 actctcaacaatcttggcttgtaaatgtaggatgacagaacctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaaa 216  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42927674 actcttaacaatcttggtttgtaaatgtaggatgacagaacctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaaa 42927575  T
Q  217 ggtacccaagaaggggttgggaggatggttttccttcctatttaaaatttcccatttctgatgcacactttggacattaaggttcgtccttttattgctg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42927574 ggtacccaagaaggggttgggaggatggttttccttcctatttaaaatttaccatttctgatgcacactttggacattaaggttcgtccttttattgctg 42927475  T
Q  317 caattgcgaataaagcgtgtagatccaccactgcagtagaactccttggaaaatttctggtgaaattaaagttttc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42927474 caattgcgaataaagcgtgtagatccaccactgcagtagaactccttggaaaatttctggtgaaattaaagttttc 42927399  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 387 - 542
Target Start/End: Complemental strand, 42927359 - 42927204
Alignment:
Q  387 gttttctgttccagtttcattcactcgattgcagcgaacccagatagaacgcgcttctgcgtgggctgatcttgatgatgtcgaactgatgcctcaacca 486  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42927359 gtttactgttccagtttcattcactcgattgcggcgaacccagatagaacgcgcttctgcgtgggctgatcttgatgatgttgaactgatgcctcaacca 42927260  T
Q  487 atagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttctct 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42927259 atagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttctct 42927204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 44728523 - 44728399
Alignment:
Q  262 aatttcccatttctgatgcacactttggacattaaggttcgtccttttattgctgcaattgcgaataaagcgtgtagatccaccactgcagtagaactcc 361  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||| ||| |||| ||| | ||| |||||||||||||||||||    
T  44728523 aatttcccatttctgatgcacactttggacattaagattcgtccttttgtagctgcatttgtgaacaaagtgtgcaaatcaaccactgcagtagaactcc 44728424  T
Q  362 ttggaaaatttctggtgaaattaaa 386  Q
    ||||||| ||||||||||| |||||    
T  44728423 ttggaaactttctggtgaatttaaa 44728399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 541
Target Start/End: Complemental strand, 44728269 - 44728199
Alignment:
Q  471 actgatgcctcaaccaatagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttctc 541  Q
    |||||||||| |||||| ||||||||||||| |||||||||| |||||||||||  |||||||||||||||    
T  44728269 actgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttctc 44728199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 44728763 - 44728705
Alignment:
Q  157 cctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtggaa 215  Q
    ||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||    
T  44728763 cctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaa 44728705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 519
Target Start/End: Original strand, 47842649 - 47842696
Alignment:
Q  472 ctgatgcctcaaccaatagcagtggctttgttttatgcacaacaacaa 519  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  47842649 ctgatgcctcaaccaacagcagtggctttgttgtatgcacagcaacaa 47842696  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 47842115 - 47842147
Alignment:
Q  157 cctgaaatagcaattggaattgacattggcaca 189  Q
    ||||||||||||||||||||||| |||||||||    
T  47842115 cctgaaatagcaattggaattgatattggcaca 47842147  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 21111418 - 21111362
Alignment:
Q  158 ctgaaatagcaattggaattgacattggcacatcaccatgccgtgtttctgtgtgga 214  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||    
T  21111418 ctgaaatagcaattggaattgacattggcacatcaacatgttgtgtttccgtgtgga 21111362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 540
Target Start/End: Complemental strand, 21354388 - 21354321
Alignment:
Q  473 tgatgcctcaaccaatagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttct 540  Q
    |||| ||||||| || |||||||||| |||| ||||||||||||||||||||  ||||||||||||||    
T  21354388 tgattcctcaactaacagcagtggctctgttgtatgcacaacaacaactgcatgcttctgcttcttct 21354321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 21305751 - 21305704
Alignment:
Q  265 ttcccatttctgatgcacactttggacattaaggttcgtccttttatt 312  Q
    |||||||||||||||||||| || |||||||||||||  |||||||||    
T  21305751 ttcccatttctgatgcacaccttagacattaaggttcacccttttatt 21305704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1787 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 1279 - 1328
Alignment:
Q  265 ttcccatttctgatgcacactttggacattaaggttcgtccttttattgc 314  Q
    |||||||||||||||||||  ||||||||||||||||  |||||||||||    
T  1279 ttcccatttctgatgcacagcttggacattaaggttcacccttttattgc 1328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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