View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_high_2 (Length: 490)
Name: NF2486_high_2
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 35762514 - 35762049
Alignment:
| Q |
1 |
gaaacatgcaaaagacaaaggacaaagaaaaacctccaccaaaggccggcgccgtaggctgaccagaaaccaaacaacaacaaaaattatgctgttnnnn |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35762514 |
gaaacatgcaaaagacaaaggataaagaaaaacctccaccaaaggccggcgccgtaggctgaccagaaaccaaacaacaacaaaaattatgctgttaaaa |
35762415 |
T |
|
| Q |
101 |
nnncacagaaacggcctctatacactgcaaaatcgagcagagaagtaacctagtcatattaaccatggctatggtggataaaaacactacaatgtattac |
200 |
Q |
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| T |
35762414 |
aaacacagaaacggcctctatacactgcaaaatcgagcagagaagtaacctagtcatattaaccatggctatggtggataaaaacactacaatgtattac |
35762315 |
T |
|
| Q |
201 |
caatttggtgtaggaaacaagtaatatagatgctttgannnnnnnaaccatgtagtctttgattcgttatcggttgatgcgtatagaaaaatatatgaga |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
35762314 |
caatttggtgtaggaaacaagtaatatagattctttgatttttttaaccatgtagtctttgattcgttattggctgatgcgtatagaaaaatatatgaga |
35762215 |
T |
|
| Q |
301 |
tatgtaaatattattcaatcccaaattaatggatttgatgaagatgatacaacaaaatgtgggtttattccaagttaaactgataaacaaaaacccaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35762214 |
tatgtaaatattattcaatcccaaattaatggatttgatgaagatgatacaacaaaatgtgggtttattccaagttaaaccgataaacaaaaacccaaat |
35762115 |
T |
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| Q |
401 |
atttagagaaaatgattgggtgatattaaattagaaagccctatacttggttgcttgctaacttaa |
466 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35762114 |
atttagagaaaataattgggtgatattaaattagaaagccctatacttggttgcttgctaacttaa |
35762049 |
T |
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