View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_high_4 (Length: 392)
Name: NF2486_high_4
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 2401054 - 2400684
Alignment:
| Q |
19 |
tctaccttattgtactctctctattgtggtccatccttttccttccttatatctctttcacccctttctccatttttgcataccatatatcatatcttac |
118 |
Q |
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| T |
2401054 |
tctaccttactgtactctctctattgtggtccatccttttccttccttatatctctttcacccctttctccatttttgcataccatatatcatatcttac |
2400955 |
T |
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| Q |
119 |
acttctttttctagtccttccattctccttccactatatatatagcttgtgtcgtctcaatcctctatatatagctattacatatgttatagctaggaac |
218 |
Q |
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| T |
2400954 |
acttctttttctagtccttccattctccttccactatatatatagcttgtgtcgtctcaatcctctatatatagctattacatatgttatagctaggaac |
2400855 |
T |
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| Q |
219 |
aataattaaagcacttgcactttgaattagaacccattacactaatttagccaactagcttaattaaggatatgtctagtcgaagatcaaggcaacaatc |
318 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2400854 |
aataattaaagtacttgcactttga---agaacccattacactaatttagacaactagcttaattaaggatatgtctagtcgaaggtcaaggcaacaatc |
2400758 |
T |
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| Q |
319 |
aggtgggtctacacggatttctggtgaccaaattaccgaccttgtttgcaaattgcgtcaacttgttcctgaga |
392 |
Q |
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||| |||||||| ||||| |||| ||||||||| | ||||||||||||||||||||| |||||||||||||||| |
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| T |
2400757 |
aggagggtctactcggatctctgatgaccaaatcatcgaccttgtttgcaaattgcgccaacttgttcctgaga |
2400684 |
T |
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