View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2486_high_5 (Length: 377)
Name: NF2486_high_5
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 18242763 - 18243126
Alignment:
| Q |
18 |
cctttctccttccctatctcgctaacattacagcatcttca-----------atgtgcatctctccacttccccatctcttcatctctttgttcatatga |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18242763 |
cctttttccttccctatctcgctaacattacagcatcttcatctctttgctgatgtgcatctctacacttccccatctcttcatctctttgttcatatga |
18242862 |
T |
|
| Q |
107 |
cannnnnnnnnnnnnnnnnnnnctaccttctgaatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgcaaaacaaaatcatgtaat |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18242863 |
cattttttctttttacatttttctaccttctgaatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgcaaaacaaaatcatgtaat |
18242962 |
T |
|
| Q |
207 |
tgtcctaaaaaaccaattaacctgaaaattagaaaaagggg-ttattattattactatgctaaacatcgaacaatctgaaccataatttctgtgaaattt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18242963 |
tgtcctaaaaaaccaattaacctgaaaattagaaaaagggggttattattattactatgctaaacatcgaacaatctgaatcataatttctgtgaaattt |
18243062 |
T |
|
| Q |
306 |
taatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18243063 |
taatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
18243126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 24180673 - 24180293
Alignment:
| Q |
18 |
cctttctccttccc-tatctcgctaacattacagcatcttca-----------atgtgcatctctccacttccccatctcttcatctctttgttcatatg |
105 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24180673 |
cctttctccttcccctatctcgcttacattacagcatcttcatctctttactgatgtgcatctctacacttccccatctcttcatctctttgttcatatg |
24180574 |
T |
|
| Q |
106 |
acannnnnnnnnnnnnnnnnnnnctaccttctgaatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgcaaaacaaaatcatgtaa |
205 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24180573 |
acatttttctttttacattttt-ctaccttctgaatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgcaaaacaaaatcatgtaa |
24180475 |
T |
|
| Q |
206 |
ttgtcctaaaaaaccaattaacctgaaaattagaaaaaggggttattatt------------------attactatgctaaacatcgaacaatctgaacc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
24180474 |
ttgtcctaaaaaaccaattaacctgaaaattaaaaaaaggggttattattattattattattattattattattatgctaaacatcgaacaatctgaacc |
24180375 |
T |
|
| Q |
288 |
ataatttctgtgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24180374 |
ataatttctgtgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
24180293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 21149293 - 21149208
Alignment:
| Q |
129 |
ctaccttctgaatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgcaaaacaaaatcatgtaattgtcctaaa |
215 |
Q |
| |
|
|||||||| |||||||||||||| || | ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |
|
|
| T |
21149293 |
ctaccttccgaatctagatcaatgacaagcgtatgcttttcatgttcaattcaattttgcaaatc-aaatcatgtaattgacctaaa |
21149208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 52255402 - 52255346
Alignment:
| Q |
313 |
ttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52255402 |
ttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatctc |
52255346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 369
Target Start/End: Complemental strand, 48715151 - 48715053
Alignment:
| Q |
268 |
aacatcgaacaatctgaaccataatttctgtgaaattttaatgatttcatgatgaacatcaaataatgtagaaaaataagaatatcattttcctttcatc |
367 |
Q |
| |
|
|||| |||||| ||| ||||||| | ||| |||||||||| ||||||||||| |||||||| || ||||||||||| ||| |||||||||||||||| |
|
|
| T |
48715151 |
aacaacgaacagtctaaaccatattatctatgaaattttactgatttcatgag---catcaaattatatagaaaaataaaaatctcattttcctttcatc |
48715055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University