View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2486_low_1 (Length: 637)
Name: NF2486_low_1
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Complemental strand, 5420525 - 5419994
Alignment:
| Q |
8 |
agattattctagagcaaaagagattattcaaattcaacagttaggttcatattgctgtataatatagaagttgtagaggtctctaaaactgcacggtaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5420525 |
agattattctagagcaaaagagattattcaa------cagttaggttcatattgctgtataatatagaagttgtagaggtctctaaaactgcacggtaat |
5420432 |
T |
|
| Q |
108 |
tgcaattttagccgtattggatgcattttgccgcgatataattgtccaaaatgtc----actaggccgtaatctcaatttagaattatggttactggtta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
5420431 |
tgcaattttagccgtattggatgcattttgccgcgatataattgtccaaaatgtctgtcactaggccgtaatcacaatttagaattatggttgctggtta |
5420332 |
T |
|
| Q |
204 |
tgcttacaaatatgcagattaaatcacactcaagtatagaaaatacagcaatgcaaacaaaatgcttgctgtcaaagataccaagtctatctttaaaggg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5420331 |
tgcttacaaatatgcagattaaatcacactcaagtatagaaaatacagcaatgcaaacaaaatgcttgctgtcaaagataccaattctatctttaaaggg |
5420232 |
T |
|
| Q |
304 |
tattctcaagcagcctaaaaggaaaatttgtttatttaaaattaagaaattaaaagtttacattacaaacagatacaatcatgagaatcaaagtatttat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5420231 |
tattctcaagcagcctaaaaggaaaatttgtttatttaaaattaagaaattaaaagtttacattacaaacagatacaatcatgagaatcaaagtatttat |
5420132 |
T |
|
| Q |
404 |
tttataaacttnnnnnnnccataaaacctgtttaacacattacacattatagaggaccctgatttattcccattctcatcataccaattatctttcacaa |
503 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5420131 |
tttataaacttaaaaaaaccataaaacctgattaacacattacacattatagaggaccctgatttattcccattctcatcataccaattatctttcacaa |
5420032 |
T |
|
| Q |
504 |
tactatatgacacaaagattaatcagctaagaagagta |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5420031 |
tactatatgacacaaagattaatcagctaagaagagta |
5419994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 621
Target Start/End: Complemental strand, 5419952 - 5419916
Alignment:
| Q |
585 |
caggccagtagtggaacaaagttgtatatatagatgg |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5419952 |
caggccagtagtggaacaaagttgtatatatagatgg |
5419916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 15958697 - 15958651
Alignment:
| Q |
448 |
cattatagaggaccctgatttattcccattctcatcataccaattat |
494 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
15958697 |
cattatagaggaccctgatttattctcattctaatcacaccaattat |
15958651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 15958631 - 15958595
Alignment:
| Q |
458 |
gaccctgatttattcccattctcatcataccaattat |
494 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
15958631 |
gaccctgatttattcccattctaatcacaccaattat |
15958595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University