View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_low_10 (Length: 350)
Name: NF2486_low_10
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 41735905 - 41736237
Alignment:
| Q |
1 |
taatttgcgtgctcgtgatttctcataataagtaataaccgttcaacataaaaaacatagtatcaaatattcatcacaaattcatatgtttcagccactt |
100 |
Q |
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| T |
41735905 |
taatttgcgtgctcgtgatttctcataataagtaataaccgttcaacataaaaaacatagtatcaaatattcatcacaaattcatatgtttcagccactt |
41736004 |
T |
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| Q |
101 |
aatctgaaaattaaataattcaaacaagtcaaattaattattttattttctatataataaagctgagcaagtagcaacatttggtggttcatcaaatttg |
200 |
Q |
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| T |
41736005 |
aatctgaaaattagataattcaaacaagtcaaattaattattttattttctatataataaagctgagcaagtagcaacatttggtggttcatcaaatttg |
41736104 |
T |
|
| Q |
201 |
aaaggagggaaaaacgaaagtttttaaaatgcaatttcaatttcaataacatagtgggaagcagttgcacccaatatgcctaaaccccatgaataataca |
300 |
Q |
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| T |
41736105 |
aaaggagggaaaaacaaaagtttttaaaatgcaatttcaatttcaataacatagtgggaagcagttgcacccaatatgcccaaaccccatgaataataca |
41736204 |
T |
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| Q |
301 |
accgctcttgttgccacatgccatcaaccgttt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
41736205 |
accgctcttgttgccacatgccatcaaccgttt |
41736237 |
T |
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