View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_low_12 (Length: 313)
Name: NF2486_low_12
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 155 - 292
Target Start/End: Complemental strand, 40648400 - 40648263
Alignment:
| Q |
155 |
acaagcatacacacacacatattatacaatttatgagagtggtgaaaattggaaagagggtttgtaaaattcggtgacaaacctctcgagaagtatggga |
254 |
Q |
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| T |
40648400 |
acaagcatacatacacacatattatacaatttatgagagtggtgaaaattggaaagagggtttgtaaaattcggtgacaaacctctagagaaatatggga |
40648301 |
T |
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| Q |
255 |
gagtgagtatgagaaagagaaagaaacaattggtggtg |
292 |
Q |
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| T |
40648300 |
gagtgagtatgagaaagagaaagaaacaattggtggtg |
40648263 |
T |
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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40648550 - 40648461
Alignment:
| Q |
1 |
cgatctcataaatttctgtatccaatgcttctgatccccctcaaatttaaaaacataacaccaagaaacaaatcaataatattgtagaaa |
90 |
Q |
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| T |
40648550 |
cgatctcataaatttctgtatccaatgcttctgatccccctcaaatttaaaaacataacaccaagaaacaaatcaataatattgtagaaa |
40648461 |
T |
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