View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_low_13 (Length: 300)
Name: NF2486_low_13
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 3822507 - 3822236
Alignment:
| Q |
17 |
agacacttcagttttttccattcatgtttcaagatataattggtatcaaattgaaaagtggttgatttttcaatgaaccaatcgttttcaattataatca |
116 |
Q |
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| T |
3822507 |
agacacttcatttttttccattcatgtttcaagatataattggtatcaaattgaaaagtggttgatttttcaatgaaccaatcgttttcaattataatca |
3822408 |
T |
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| Q |
117 |
cttttataaactatagatagtcataatagaattcatattggcaatatctttcgttcatgttactgttacactacgttgtttctccaagttgaatgattag |
216 |
Q |
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| T |
3822407 |
cttttataa-ctatagatagtcataatagaattcatattggcaatatctttcgttcatgttactgttacactacgttgtttctccaagttgaatgattag |
3822309 |
T |
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| Q |
217 |
taggactttgagttgagtgaccttcacttttgtcagcaatgaggtagtagctatagtacattttttgtttcat |
289 |
Q |
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| T |
3822308 |
taggactttgagttgagtgaccttcacttttgtcagcaatgaggtagtagctatagtacattttttgtttcat |
3822236 |
T |
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