View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2486_low_17 (Length: 238)

Name: NF2486_low_17
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2486_low_17
NF2486_low_17
[»] chr4 (6 HSPs)
chr4 (107-214)||(240389-240496)
chr4 (107-196)||(228862-228951)
chr4 (114-198)||(47819289-47819373)
chr4 (115-200)||(27353548-27353633)
chr4 (113-192)||(38487135-38487214)
chr4 (21-49)||(229051-229079)
[»] chr5 (5 HSPs)
chr5 (113-200)||(17537460-17537547)
chr5 (115-198)||(36107397-36107480)
chr5 (112-198)||(38100489-38100575)
chr5 (113-158)||(13054784-13054829)
chr5 (113-157)||(12981506-12981550)
[»] chr3 (4 HSPs)
chr3 (113-201)||(53197840-53197928)
chr3 (113-198)||(20831754-20831839)
chr3 (113-199)||(24250126-24250212)
chr3 (113-145)||(587853-587885)
[»] chr1 (1 HSPs)
chr1 (113-200)||(8124470-8124557)
[»] chr8 (4 HSPs)
chr8 (115-198)||(7538653-7538736)
chr8 (113-195)||(24546879-24546961)
chr8 (113-199)||(24545884-24545969)
chr8 (113-199)||(24550633-24550719)
[»] chr7 (3 HSPs)
chr7 (113-200)||(14794867-14794954)
chr7 (113-200)||(15241859-15241946)
chr7 (113-200)||(28276398-28276485)
[»] chr6 (1 HSPs)
chr6 (113-217)||(19402338-19402442)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 240496 - 240389
Alignment:
Q  107 gaattgaatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgacttattgat 206  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  240496 gaattaaatgtcagaagtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgacgaattgat 240397  T
Q  207 attgatga 214  Q
     |||||||    
T  240396 gttgatga 240389  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 228951 - 228862
Alignment:
Q  107 gaattgaatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctg 196  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  228951 gaattgaatgtcagaagtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggccatcctg 228862  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 47819289 - 47819373
Alignment:
Q  114 atgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 198  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47819289 atgtcagaagtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 47819373  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 27353633 - 27353548
Alignment:
Q  115 tgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27353633 tgtcagaagtgggatttgaacccacgccctctctcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 27353548  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 38487214 - 38487135
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccat 192  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||  ||| || ||||||||||||||| |||||||||    
T  38487214 aatgtcagaagtgggttttgaacccacgccctctcacgaggaccagttcttaagactggcgccttagacctctcggccat 38487135  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 229079 - 229051
Alignment:
Q  21 agagaaaaatgaagtaacaagttagattt 49  Q
    |||||||||||||||||||||||||||||    
T  229079 agagaaaaatgaagtaacaagttagattt 229051  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 17537547 - 17537460
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17537547 aatgtcagaagtgggatttgaacccacgccctctttcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 17537460  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 36107480 - 36107397
Alignment:
Q  115 tgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 198  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36107480 tgtcagaagtgggatttgaacccacgccctctctcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 36107397  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 38100489 - 38100575
Alignment:
Q  112 gaatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 198  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38100489 gaatgtcagaagtgggatttgaacccacgccctctctcgaagaccaaaacttgagtctggcgccttagaccactcggccatcctgac 38100575  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 13054829 - 13054784
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccag 158  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13054829 aatgtcagaagtgggatttgaacccacgccctctttcgaagaccag 13054784  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 12981550 - 12981506
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagacca 157  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  12981550 aatgtcagaagtgggatttgaacccacgccctctttggaagacca 12981506  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 53197840 - 53197928
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactta 201  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53197840 aatgtcagaagtgggatttgaacccacgccctctctcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactta 53197928  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 20831754 - 20831839
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 198  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20831754 aatgtcagaagtgggatttgaacccatgccctctctcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 20831839  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 24250212 - 24250126
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgact 199  Q
    ||||||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  24250212 aatgtcagaagtgggatttgaacccacgctctctcacgagaaccagaacttgagtctggcgccttagaccactcggccatcctgact 24250126  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 587853 - 587885
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctc 145  Q
    |||||||||||||||||||||||||||||||||    
T  587853 aatgtcagaagtgggatttgaacccacgccctc 587885  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 8124470 - 8124557
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 200  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8124470 aatgtcagaagtgggatttgaacccacgccctctctcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 8124557  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 7538736 - 7538653
Alignment:
Q  115 tgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 198  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7538736 tgtcagaagtgggatttgaacccacgccctctctcgaagaccagaacttgagtctggcgccttagaccactcggccatcctgac 7538653  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 24546879 - 24546961
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcct 195  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||| |||||||||||    
T  24546879 aatgtcagaagtgggatttgaacccacgccctctctcaaagaccagaacttgagtctggcgccttagaccagtcggccatcct 24546961  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 24545884 - 24545969
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgact 199  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  24545884 aatgtcagaagtgggatttgaaccc-cgccctctctcgaagaccaaaacttgagtctggcaccttagaccactcggccatcctgact 24545969  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 24550633 - 24550719
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgact 199  Q
    |||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  24550633 aatgtcagaagtgggatttgaaccgacgccctctctcgaagaccaaaacttgagtctcgtgccttagaccactcggccatcctgact 24550719  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 14794867 - 14794954
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 200  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  14794867 aatgtcaaaagtgggatttgaacccacgccctctttcgaagaccaaaacttgagtctggcgccttagaccactcgaccatcctgactt 14794954  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 15241859 - 15241946
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 200  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  15241859 aatgtcaaaagtgggatttgaacccacgccctctttcgaagaccaaaacttgagtctggcgccttagaccactcgaccatcctgactt 15241946  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 28276485 - 28276398
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgactt 200  Q
    |||||||||| ||| |||||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  28276485 aatgtcagaaatggaatttgaacccacgctctctcacgagaaccagaacttgagtctggcgccttagaccactcggccatcctgactt 28276398  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 19402442 - 19402338
Alignment:
Q  113 aatgtcagaagtgggatttgaacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgacttattgatattgat 212  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||  |||| |||||||||||||||||||||| | ||||| |||||    
T  19402442 aatgtcagaagtgggatttgaacccacaccctctttcgaagaccagaacttgaatctaacgccatagaccactcggccatcctgacattttgatgttgat 19402343  T
Q  213 gagtt 217  Q
    |||||    
T  19402342 gagtt 19402338  T

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