View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2486_low_20 (Length: 223)

Name: NF2486_low_20
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2486_low_20
NF2486_low_20
[»] chr2 (3 HSPs)
chr2 (1-223)||(5137337-5137559)
chr2 (127-186)||(3008417-3008476)
chr2 (91-188)||(5137222-5137321)
[»] chr1 (7 HSPs)
chr1 (129-192)||(13031122-13031185)
chr1 (140-188)||(41590214-41590262)
chr1 (140-186)||(347114-347160)
chr1 (143-189)||(347345-347391)
chr1 (150-188)||(31626239-31626277)
chr1 (115-179)||(10239477-10239541)
chr1 (140-188)||(17557708-17557756)
[»] chr5 (2 HSPs)
chr5 (23-56)||(21209854-21209887)
chr5 (23-56)||(27133160-27133193)
[»] chr4 (3 HSPs)
chr4 (23-56)||(12869196-12869229)
chr4 (131-188)||(46676680-46676737)
chr4 (23-56)||(53828456-53828489)
[»] chr3 (1 HSPs)
chr3 (158-191)||(50070736-50070769)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5137337 - 5137559
Alignment:
Q  1 tccaagatccattgatacacgacacctattatcaggtttccgttatcgggtcacccaggttaagctccagatgttcagtcctgggcattggatgagatat 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5137337 tccaagatccattgatacacgacacctattatcagattaccgttatcgggtcacccaggttaagctccagatgttcagacctgggcattggatgagatat 5137436  T
Q  101 ggcctaacaatggatttataagtgaagcagtcctcgccatacaagctagttttgtacggttgagtttggtccaacccaaattctaagagttgctagaaaa 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5137437 ggcctaacaatggatttataagtggagcagtcctcgccatacaagctggttttgtacggttgagtttggtccaacccaaattctaagagttactataaaa 5137536  T
Q  201 atactagagaaagcaatgtcgat 223  Q
    |||||||||||||||||||||||    
T  5137537 atactagagaaagcaatgtcgat 5137559  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 3008417 - 3008476
Alignment:
Q  127 gcagtcctcgccatacaagctagttttgtacggttgagtttggtccaacccaaattctaa 186  Q
    |||| |||| || ||||||| ||||||||| ||||||||| || ||||||||||||||||    
T  3008417 gcagccctcaccttacaagccagttttgtaaggttgagttaggcccaacccaaattctaa 3008476  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 5137222 - 5137321
Alignment:
Q  91 gatgagatatggcctaacaatggatttataagt-gaagcagtcctcgccatacaagctagttttgtacggttgagttt-ggtccaacccaaattctaaga 188  Q
    ||||||||||||||| |||||| |||||||||| | || |||| || || ||||||| | ||||||| | |||||||| ||  |||||||||||||||||    
T  5137222 gatgagatatggcctgacaatgtatttataagtgggagtagtcttcaccttacaagccaattttgtaagtttgagtttagggacaacccaaattctaaga 5137321  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 13031185 - 13031122
Alignment:
Q  129 agtcctcgccatacaagctagttttgtacggttgagtttggtccaacccaaattctaagagttg 192  Q
    ||||||| || ||||| || |||||||| ||||||||| |||||||||||||||||||||||||    
T  13031185 agtcctcaccttacaaactggttttgtagggttgagttaggtccaacccaaattctaagagttg 13031122  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 41590262 - 41590214
Alignment:
Q  140 tacaagctagttttgtacggttgagtttggtccaacccaaattctaaga 188  Q
    |||||||| |||||||| |||||||||||| |||||| |||||||||||    
T  41590262 tacaagctggttttgtaaggttgagtttggcccaacctaaattctaaga 41590214  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 347114 - 347160
Alignment:
Q  140 tacaagctagttttgtacggttgagtttggtccaacccaaattctaa 186  Q
    |||||||| |||||||| ||||||||| || ||||||||||||||||    
T  347114 tacaagctggttttgtaaggttgagttagggccaacccaaattctaa 347160  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 347345 - 347391
Alignment:
Q  143 aagctagttttgtacggttgagtttggtccaacccaaattctaagag 189  Q
    |||| ||||||||| ||||||||| ||| ||||||||||||||||||    
T  347345 aagccagttttgtaaggttgagttaggttcaacccaaattctaagag 347391  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 31626277 - 31626239
Alignment:
Q  150 ttttgtacggttgagtttggtccaacccaaattctaaga 188  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  31626277 ttttgtagggttgagttaggtccaacccaaattctaaga 31626239  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 10239477 - 10239541
Alignment:
Q  115 tttataagtgaagcagtcctcgccatacaagctagttttgtacggttgagtttggtccaacccaa 179  Q
    |||||||||||  ||||||||  | ||||||| ||||||||| ||||||||| || |||||||||    
T  10239477 tttataagtgagccagtcctcagcttacaagccagttttgtaaggttgagttaggcccaacccaa 10239541  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 17557756 - 17557708
Alignment:
Q  140 tacaagctagttttgtacggttgagtttggtccaacccaaattctaaga 188  Q
    ||||||||  ||||||| ||||||||| || ||||||||||||||||||    
T  17557756 tacaagctgattttgtaaggttgagttaggcccaacccaaattctaaga 17557708  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 21209887 - 21209854
Alignment:
Q  23 cacctattatcaggtttccgttatcgggtcaccc 56  Q
    ||||| ||||||||||||||||||||||||||||    
T  21209887 cacctgttatcaggtttccgttatcgggtcaccc 21209854  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 27133193 - 27133160
Alignment:
Q  23 cacctattatcaggtttccgttatcgggtcaccc 56  Q
    ||||| ||||||||||||||||||||||||||||    
T  27133193 cacctgttatcaggtttccgttatcgggtcaccc 27133160  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 12869229 - 12869196
Alignment:
Q  23 cacctattatcaggtttccgttatcgggtcaccc 56  Q
    ||||| ||||||||||||||||||||||||||||    
T  12869229 cacctgttatcaggtttccgttatcgggtcaccc 12869196  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 46676680 - 46676737
Alignment:
Q  131 tcctcgccatacaagctagttttgtacggttgagtttggtccaacccaaattctaaga 188  Q
    ||||| || |||||| | |||||||| ||||||||| ||||||||||||||| |||||    
T  46676680 tcctcaccttacaagatggttttgtagggttgagttaggtccaacccaaattttaaga 46676737  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 53828489 - 53828456
Alignment:
Q  23 cacctattatcaggtttccgttatcgggtcaccc 56  Q
    |||||||||||||||||||||||||||| |||||    
T  53828489 cacctattatcaggtttccgttatcgggccaccc 53828456  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 50070736 - 50070769
Alignment:
Q  158 ggttgagtttggtccaacccaaattctaagagtt 191  Q
    ||||||||| ||||||||||||||||||||||||    
T  50070736 ggttgagttaggtccaacccaaattctaagagtt 50070769  T

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