View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2486_low_21 (Length: 223)

Name: NF2486_low_21
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2486_low_21
NF2486_low_21
[»] chr3 (2 HSPs)
chr3 (1-205)||(45719303-45719495)
chr3 (145-189)||(22343483-22343527)
[»] chr5 (3 HSPs)
chr5 (153-195)||(26516180-26516222)
chr5 (154-191)||(18704186-18704223)
chr5 (151-195)||(39823268-39823312)
[»] chr8 (1 HSPs)
chr8 (151-195)||(31875705-31875749)
[»] chr7 (1 HSPs)
chr7 (151-195)||(31341074-31341118)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 45719303 - 45719495
Alignment:
Q  1 aaaattgaagaaaagaacagaacaacccaagaacgctgtaaataaacacccaacatgtggtattgtcttgcgccgtaagcttggccacaaagggtctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45719303 aaaattgaagaaaagaacagaacaacccaagaacgctgtaaataaacacccaacatgtggtattgtcttgcgccgtaagcttggccacaaagggtctcaa 45719402  T
Q  101 gagcactcgccattccaagctacagaataaataaacaaagagtatagacactgtttggataaacaacttaatgaagctcttctagcataagcgctattta 200  Q
    |||||||||||||||||||||||||||||||||            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45719403 gagcactcgccattccaagctacagaataaata------------agacactgtttggataaagaacttaatgaagctcttctagcataagcgctattta 45719490  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 22343483 - 22343527
Alignment:
Q  145 tagacactgtttggataaacaacttaatgaagctcttctagcata 189  Q
    |||||| |||||||||||| |||||||| |||||||| |||||||    
T  22343483 tagacattgtttggataaataacttaattaagctcttatagcata 22343527  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 26516180 - 26516222
Alignment:
Q  153 gtttggataaacaacttaatgaagctcttctagcataagcgct 195  Q
    |||||||||||||||||||| |||| ||| |||||||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgct 26516222  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 18704223 - 18704186
Alignment:
Q  154 tttggataaacaacttaatgaagctcttctagcataag 191  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  18704223 tttggataaacaacttaattaagctcttgtagcataag 18704186  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 39823312 - 39823268
Alignment:
Q  151 ctgtttggataaacaacttaatgaagctcttctagcataagcgct 195  Q
    |||||||||||||||||||||| |||| |||  ||||||||||||    
T  39823312 ctgtttggataaacaacttaatcaagcgcttacagcataagcgct 39823268  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 31875749 - 31875705
Alignment:
Q  151 ctgtttggataaacaacttaatgaagctcttctagcataagcgct 195  Q
    ||||||||||| |||||||||||||||  || |||||||||||||    
T  31875749 ctgtttggatagacaacttaatgaagcgtttatagcataagcgct 31875705  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 31341074 - 31341118
Alignment:
Q  151 ctgtttggataaacaacttaatgaagctcttctagcataagcgct 195  Q
    |||||||||||||||||||||| |||| ||| | |||||||||||    
T  31341074 ctgtttggataaacaacttaatcaagcgcttattgcataagcgct 31341118  T

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