View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_low_23 (Length: 201)
Name: NF2486_low_23
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 42475899 - 42476048
Alignment:
| Q |
1 |
ttctgaggttcctgcttcttctctgtggattaagaatgtacctttgaaggttgttttatttgtgcggcgcctgcttcgtgataggctacctatgaaagat |
100 |
Q |
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| T |
42475899 |
ttctgaggttcctgcttcttctatgtggcttaaggatgtaccattgaaggttgttttatatgtgtggcgcctgctttgagataggctacctacgaaagat |
42475998 |
T |
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| Q |
101 |
aatctttttcgtcgtcgtgtcattaacgtggatgctcagttgtgtattgg |
150 |
Q |
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| T |
42475999 |
aatctttttcgtcgacgtgtcattaattttgatgctcagttgtgcattgg |
42476048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 14905041 - 14905077
Alignment:
| Q |
151 |
catagctactatgaatgtcaatttcagaaattctata |
187 |
Q |
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| T |
14905041 |
catagctactatgaatgtcaatttcagaatttctata |
14905077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 10062459 - 10062312
Alignment:
| Q |
3 |
ctgaggttcctgcttcttctctgtggattaagaatgtacctttgaaggttgttttatttgtgcggcgcctgcttcgtgataggctacctatgaaagataa |
102 |
Q |
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| T |
10062459 |
ctgaggtccctgcttcatctttgtggcttaaggatgtaccattgaaggttgttttatttgtgtggcgcctgtttcgagacaggctacctacgaaagataa |
10062360 |
T |
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| Q |
103 |
tctttttcgtcgtcgtgtcattaacgtggatgctcagttgtgtattgg |
150 |
Q |
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| T |
10062359 |
tctttttcgtagacgtgtcattaattttgatgctcagttgtgcattgg |
10062312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 27240025 - 27239987
Alignment:
| Q |
147 |
ttggcatagctactatgaatgtcaatttcagaaattcta |
185 |
Q |
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| T |
27240025 |
ttggcatagctactatgaatgtcaatttcagaaattcta |
27239987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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