View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2486_low_4 (Length: 477)
Name: NF2486_low_4
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 28922073 - 28921605
Alignment:
| Q |
1 |
ctatatctgcttctgatgatgtagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||| |
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| T |
28922073 |
ctatatctgcttctgatgatgtaaattgcagaaatctgagtactgacatggatgccaatcatgcagtaaaggaaaggcgaagcgcttcggttgctgatcc |
28921974 |
T |
|
| Q |
101 |
cgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28921973 |
cgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagtggagagt |
28921874 |
T |
|
| Q |
201 |
attgatattcctatttggtactgttcgggtgttcgaggctgtggaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28921873 |
attgatattcctatttggtactgttcgggtgttcgtggctgtggaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattcca |
28921774 |
T |
|
| Q |
301 |
catatgctcccttagacttcaaggtctggaagacaggcgagagtgaaagagaggcaatgcttctgagggatgcacttaagctcttttctccttgatgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
28921773 |
catatgctcccttagacttcaaggtctggaagacgggtgagagtgaaagagaggcaatgcttctaagggatgcacttaagctcttttttccttgatgtca |
28921674 |
T |
|
| Q |
401 |
aaggataaaaaagtactttatcctttgacactttgtgagatcgaaaaatttgccagtataattcttatc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28921673 |
aaggataaaaaagtactttatcctttgacactttgtgagatcgaaaaatttgccagtataattcttatc |
28921605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 5 - 403
Target Start/End: Complemental strand, 28912573 - 28912175
Alignment:
| Q |
5 |
atctgcttctgatgatgtagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcccgtt |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||| ||||| ||| | ||||||||| |
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|
| T |
28912573 |
atctgcttctgaggatgtagattgcagaaatctgagtattaacatggatgccaatcatacagtaaaggaaaggcgaagcgttactgtttcagatcccgtt |
28912474 |
T |
|
| Q |
105 |
aaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagtattg |
204 |
Q |
| |
|
|||| ||| ||||||||| || || |||||||||||||||||||||||||||| || | |||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
28912473 |
aaggcaatcatcaatgatgttattgttttaagtgacagtgatgaagaggatgtgaatagtaaagtcacttcatctggaagaaagggagcggagagtattg |
28912374 |
T |
|
| Q |
205 |
atattcctatttggtactgttcgggtgttcgaggctgtggaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattccacata |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28912373 |
atattcctatttggtactgttcgggtgttcgtggctgtggaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattccacata |
28912274 |
T |
|
| Q |
305 |
tgctcccttagacttcaaggtctggaagacaggcgagagtgaaagagaggcaatgcttctgagggatgcacttaagctcttttctccttgatgtcaaag |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
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|
| T |
28912273 |
tgctcccttagacttcaaggtctggaagacgggcgagagtgaaagagaggcaatgcttctgagggatgcacttaagctcttttttccctaatgtcaaag |
28912175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 28898072 - 28897686
Alignment:
| Q |
1 |
ctatatctgcttctgatgatgtagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcc |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| | | |||||||||| |
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|
| T |
28898072 |
ctatatctgcttctgttggtgtagattgcagaaatctgagtactaacatggatgccaatcagacagtaaaggaaaggcgaagccctgctgttgctgatct |
28897973 |
T |
|
| Q |
101 |
cgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagt |
200 |
Q |
| |
|
||||||| || |||||||||| || | ||||||||||| |||||||||||||||| |||| || |||||||||| | ||||||||||| ||||||| |
|
|
| T |
28897972 |
tgttaaggcgactgtcaatgatgttattattttaagtgacagcgatgaagaggatgtgaatattaaaataacttcatcggaaagaaagggagtggagagt |
28897873 |
T |
|
| Q |
201 |
attgatattcctatttggtactgttcgggtgttcgaggctgtggaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattcca |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| || | || |||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||| |
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|
| T |
28897872 |
cctgatattcctatttggcactgttcgggtatttgtggtagtggaacaagagggccttttccaatgtctatactcaaacagtggagcgaattggattcca |
28897773 |
T |
|
| Q |
301 |
catatgctcccttagacttcaaggtctggaagacaggcgagagtgaaagagaggcaatgcttctgagggatgcacttaagctctttt |
387 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28897772 |
cattttctcccttagacttcaaggtctggaagacaggtgaaagtgaaagagaggcaatgcttctgagggatgcacttaagctgtttt |
28897686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 28931141 - 28930759
Alignment:
| Q |
1 |
ctatatctgcttctgatgatgtagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||| | ||| |||| |||||||||||| |
|
|
| T |
28931141 |
ctatatctgcttcttatgatgtagattgcagaaatctgaatactaacatggatgccaatcagacagtaaaggaaattcaaagcgttatggttgctgatcc |
28931042 |
T |
|
| Q |
101 |
cgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaagaggatgtgagtattgaagtaacttcatctggaagaaagggagaggagagt |
200 |
Q |
| |
|
|||||| || ||||||||| || ||||||||||||||||||||||||||||| | |||| |||| |||||| | | ||||||||||| || |||| |
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|
| T |
28931041 |
tgttaagccgactgtcaatgattttattgtgttaagtgacagtgatgaagaggatgttaatattaaagtcacttcagcagaaagaaagggagtggtgagt |
28930942 |
T |
|
| Q |
201 |
attgatattcctatttggtactgttcgggtgttcgaggctgtggaacaagagggccttttccaatgactgtactcaaacactggagtgaattggattcca |
300 |
Q |
| |
|
|||| || | |||||| | ||||||||| ||||||| ||||||||| |||||||||| ||||| |||||||||||| |||||| |||| | ||| |
|
|
| T |
28930941 |
tctgatgtttccatttggcattgttcgggtattcgaggtggtggaacaaaagggcctttttcaatgtctgtactcaaacgctggagcgaat---ctgcca |
28930845 |
T |
|
| Q |
301 |
catatgctcccttagacttcaaggtctggaagacaggcgagagtgaaagagaggcaatgcttctgagggatgcacttaagctctttt |
387 |
Q |
| |
|
||| | |||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
28930844 |
catcttctcccttaaactacaaggtctggaagacaggtgagagtgaaagagaggcaatacttttgagggatgcactt-agctctttt |
28930759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 28888408 - 28888022
Alignment:
| Q |
1 |
ctatatctgcttctgatgatgtagattgcagaaatctgagtactgacatggatgccaatcatgcagtaagggaaaggcgaagtgttacggttgctgatcc |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| || || | |||||||| |||| |||||| ||||||| ||| |||| |||||| ||||| |
|
|
| T |
28888408 |
ctatatatgcttctgctgatgtagattgcagaaatctaggttctaatatggatgctgatcaaacagtaaaggaaaggaaaagcgttatggttgcggatcc |
28888309 |
T |
|
| Q |
101 |
cgttaaggtgatcgtcaatgatgctacagtgttaagtgacagtgatgaagaggatgtgagtattgaagtaacttcatctgga---agaaagggagaggag |
197 |
Q |
| |
|
|| |||| ||| |||||||||| || ||||||||||||||||||||||| ||||| |||| ||| ||||| || | | |||||||||| |||| |
|
|
| T |
28888308 |
tgtcaaggcgattgtcaatgatgttattgtgttaagtgacagtgatgaaga---tgtgaatattagagttacttcttcagcagcaagaaagggagtggag |
28888212 |
T |
|
| Q |
198 |
agtattgatattcctatttggtactgttcgggtgttcgaggctgtggaacaagagggccttttccaatgactgtactcaaacactggagtgaattggatt |
297 |
Q |
| |
|
| | ||||||| | |||||||| ||||| ||| |||| || ||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
28888211 |
aatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggccttttccaatgtctgtactcaaacactggagcgaattggatt |
28888112 |
T |
|
| Q |
298 |
ccacatatgctcccttagacttcaaggtctggaagacaggcgagagtgaaagagaggcaatgcttctgagggatgcacttaagctctttt |
387 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28888111 |
ccacattttctcccttagatttcaaggtctggaagacagatgagagtgaaagagaggcaatgcttctgagggatgcacttgggctctttt |
28888022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 406 - 468
Target Start/End: Complemental strand, 28912060 - 28911998
Alignment:
| Q |
406 |
taaaaaagtactttatcctttgacactttgtgagatcgaaaaatttgccagtataattcttat |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
28912060 |
taaaaaagtactttatcctttgacactttgtgagatcgaaaaatttgcccgtataatccttat |
28911998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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