View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_low_5 (Length: 451)
Name: NF2486_low_5
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 41337955 - 41337675
Alignment:
| Q |
1 |
ttaaaaaacatgaaaaatataataaaagaagagagaggcaacacaaataatccatctgctaacttatatagattattagtcttgaaatc-----tagctg |
95 |
Q |
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| T |
41337955 |
ttaaaaaacatgaaaaatataataaaagaagagagaggcaacacaaataatccatcttctaacttatatagattattagtcttgaaatcatatctagcta |
41337856 |
T |
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| Q |
96 |
caggtctaacagggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagagattttgttcatca |
195 |
Q |
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| T |
41337855 |
caggtctaacagggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagagattttgttcatca |
41337756 |
T |
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| Q |
196 |
aaattacatttattaatttatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgcagacacttcataca |
276 |
Q |
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| T |
41337755 |
aaattacatttattaatttatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgtagacacttcataca |
41337675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 274 - 433
Target Start/End: Complemental strand, 41337624 - 41337465
Alignment:
| Q |
274 |
acagaatcatctttgataaaagaattgtctcaatgaaggttttaaagtgaaatacctctactgatgctatgccccaggttgttgttttcctgcagaggat |
373 |
Q |
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| T |
41337624 |
acagaatcatctttgataaaagaattgtttcaatgaaggttttaaagtgaaatacctctactgatgctatgccccaggttgttgttttcctgcagaggat |
41337525 |
T |
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| Q |
374 |
caataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaac |
433 |
Q |
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| T |
41337524 |
caataatattgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaac |
41337465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 36136327 - 36136230
Alignment:
| Q |
108 |
ggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagagattttgttcatcaaaattacatt |
205 |
Q |
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| T |
36136327 |
ggcatctaaaatttgcaatagtttggatccactgatatattattcagcataatttggagttacttatgcttggagattttgtttatcaaaattacatt |
36136230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 433
Target Start/End: Complemental strand, 36136061 - 36135911
Alignment:
| Q |
291 |
aaaagaattgtctcaatgaaggttttaaagtgaaatacctctactgatgctatgc--------cccaggttgttgttttcctgcagaggatcaataatat |
382 |
Q |
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||||||||||| | |||||||||||||||| | |||||| ||||||||||| || |||||||||||| || || |||||| ||||||||||| |
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| T |
36136061 |
aaaagaattgttccgatgaaggttttaaagttatatacctttactgatgctacgcggctacgccccaggttgttgcttgcccgcagagaatcaataatat |
36135962 |
T |
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| Q |
383 |
tgatgtgtttggaaacaaaatgcttctctcgatttttctggttgcgccaac |
433 |
Q |
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| T |
36135961 |
tgatgtgtttggaaacaaaatgcttctcgtgattttcctggttgcaccaac |
36135911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 36136191 - 36136129
Alignment:
| Q |
214 |
tatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactgcagacacttcataca |
276 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36136191 |
tatcacactcaaaagtggaaaaatatcattgctcttaagaatatactgcagacacttcataca |
36136129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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