View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_low_6 (Length: 440)
Name: NF2486_low_6
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 52855172 - 52855586
Alignment:
| Q |
1 |
gatatttgttggactaataccagtttgaaattgcatcatgcaaatgaaacataataaccaaaaaacagtcaaagtggcttatgttttacatcatctctat |
100 |
Q |
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| T |
52855172 |
gatatttgttgaactaataccagtttgaaattgcatcatgcaaatgaaacataataaccaaaaaacagtcaaagtggcttatgttttacatcatctctat |
52855271 |
T |
|
| Q |
101 |
tacaacttatagtaatgccatgaaaatagaaggttaatttggcattatggaatattcagctcttcaaagtataacagttattttttatctgcaaatttaa |
200 |
Q |
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| T |
52855272 |
tacaacttatagtaatgccatgaaaatagaaggttaatttggcattatggaatattcagctcttcaaagtataacagttattttttatctgcaaatttaa |
52855371 |
T |
|
| Q |
201 |
taaaagaccggaacttaccttataccttatccgttgtataagtgtaatgctcccatagatgggtacaaagccaggctccacccattggccataaagccca |
300 |
Q |
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| T |
52855372 |
taaaagaccggaact-------taccttatccgttgtataagtgtaatgctcccatagatgggtacaaagccaggctccacccattggccataaagccca |
52855464 |
T |
|
| Q |
301 |
aacagccggacctcgatatgtggatgttttagcccataagtcagaaacatgatgtgcaacccaaccatttgcgtcgtagttcacctgcatgccagatcaa |
400 |
Q |
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| T |
52855465 |
aacagccggacctcgatatgtggatgttttagcccataagtcagaaacatgatgtgcaacccaaccatttgcgtcgtagttcacctgcatgccagatcaa |
52855564 |
T |
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| Q |
401 |
atgaaattctttatactatata |
422 |
Q |
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| T |
52855565 |
atgaaattctttatacaatata |
52855586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 223 - 408
Target Start/End: Original strand, 48485997 - 48486182
Alignment:
| Q |
223 |
taccttatccgttgtataagtgtaatgctcccatagatgggtacaaagccaggctccacccattggccataaagcccaaacagccggacctcgatatgtg |
322 |
Q |
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|||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| || |
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| T |
48485997 |
taccttgtccattgtataactgtaatgctcccatagatgggtacaaagccaagctccacccatcggccataaagcccaaacagcctcacctcgatctggc |
48486096 |
T |
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| Q |
323 |
gatgttttagcccataagtcagaaacatgatgtgcaacccaaccatttgcgtcgtagttcacctgcatgccagatcaaatgaaatt |
408 |
Q |
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| T |
48486097 |
gatgttttagcccataagtcagaaacttgatgtgcaacccaaccatttgcttcatagttcacctgcatgccagatcaaatgaaatt |
48486182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 48485730 - 48485892
Alignment:
| Q |
3 |
tatttgttggactaataccagtttgaaattgcatcatgcaaatgaaacataataaccaaaaaacagtcaaagtggcttatgttttacatcatctctatta |
102 |
Q |
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|||||||||||||||||||||||||| || ||| || || | |||||||||||||||||| |||||| || |||| ||| ||||||||||| || |
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| T |
48485730 |
tatttgttggactaataccagtttgacatctcattttgtaagttaaacataataaccaaaaattgctcaaagggggttatatttc-catcatctctagta |
48485828 |
T |
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| Q |
103 |
caacttatagtaatgccatgaaaatagaaggttaatttggcat-tatggaatattcagctcttc |
165 |
Q |
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|||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||| |||||||| |
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| T |
48485829 |
caacttatagcaatgccatggaaattgaaggttaatttggcatgtatggaatatttagctcttc |
48485892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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