View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2486_low_8 (Length: 380)
Name: NF2486_low_8
Description: NF2486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2486_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 5394457 - 5394811
Alignment:
| Q |
19 |
atgacggtggccggagatggatgtttgtgactgctccggttaggtatagttttgtaaatgtaacgaagttcgtgtttcggtatgtaatgtgtcgtttatg |
118 |
Q |
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| T |
5394457 |
atgacggtggccggagatggaggtttgtgactgctccggttaggtatagttttgtaaatgaaacgaagttcgtgtttcggtatgtaatgtgtcgtttatg |
5394556 |
T |
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| Q |
119 |
tggttcgnnnnnnnctcttaattaattaaccaattagttcttaaacgacattaagtttatctccannnnnnncattcatgattttttagagtgagtgatc |
218 |
Q |
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| T |
5394557 |
tggttcgtttttttctcttaattaattaaccaattagttcttaaacgacattaagtttatctccatttttttcattcatgattttttagagtgagtgatc |
5394656 |
T |
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| Q |
219 |
actttaataaaaaatacaaaaattatctaaatgtgtattttgttaatcaatataatttttgggtgtgtttttagttagttagtttggtcttcaaatttat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5394657 |
actttaataaaaaatacaaaaattatctaaatgtgtattttgttaatcaatataatttttgggtgtgtttttagttagttagtttggtcttcaaatttat |
5394756 |
T |
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| Q |
319 |
cttcttttagttaacatatcattaaaattattaacaaataatttcctataatttt |
373 |
Q |
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| T |
5394757 |
cttcttttagttaacatatcattaaaattattaacaaataatttcctataatttt |
5394811 |
T |
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