View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488-Insertion-3 (Length: 337)
Name: NF2488-Insertion-3
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488-Insertion-3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 8348658 - 8348329
Alignment:
| Q |
8 |
ggaagttagagagaaatttagttgggttgagttggctgagagagaagaaaatattgaagatgttattggtgttacaaaagaagaaatggaaatgtttgtt |
107 |
Q |
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| T |
8348658 |
ggaagttagggagaaatttagttgggttgagttggctgagagagaagaaaatattgaagatgttattggtgttacaaaagaagaaatggaaatgtttgtt |
8348559 |
T |
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| Q |
108 |
gatcttcatcctcttactaatacaactcctttcaccgtgttagagagtatgtctgtagcaaaagcccgaatccttttcagacaagtcggacttcgtcata |
207 |
Q |
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| T |
8348558 |
gatcttcatcctcttactaatacaactcctttcaccgtgttagagagtatgtccgtagcaaaagcccgaatccttttcagacaagtcggacttcgtcata |
8348459 |
T |
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| Q |
208 |
tgcttgttgtaccgaagtatcaagcgtccggggtgagttcattaaacatgttgaattataaattttactttcatatgagcctgtttagatcgacttattt |
307 |
Q |
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| T |
8348458 |
tgcttgttgtaccgaagtatcaagcgtccggggtgagttcattaaacatgttgaattataaattttactttcatatgagcctgtttagatcgacttattt |
8348359 |
T |
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| Q |
308 |
tagcttatctaccgacataatcatttttga |
337 |
Q |
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| T |
8348358 |
tagcttatctaccgatataatcatttttga |
8348329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 10400260 - 10400478
Alignment:
| Q |
8 |
ggaagttagagagaaatttagttgggttgagttggctgagagagaagaaaatattgaagatgttattggtgttacaaaagaagaaatggaaatgtttgtt |
107 |
Q |
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| T |
10400260 |
ggaagtgagagagaaatttacctgggtagagctggccgagagagaagggaaaattgaagaggtg---gctataacaagggaagaaatggagatgtttgtt |
10400356 |
T |
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| Q |
108 |
gatcttcatcctcttactaatacaactcctttcaccgtgttagagagtatgtctgtagcaaaagcccgaatccttttcagacaagtcggacttcgtcata |
207 |
Q |
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| T |
10400357 |
gatctacatcctctcaccaatacaactccatttactgtgctagagagcatatcagttgcaaaggcaatgatcctcttcaggcaagttggacttcgtcatc |
10400456 |
T |
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| Q |
208 |
tgcttgttgtaccgaagtatca |
229 |
Q |
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| T |
10400457 |
tgcttgtagttccgaaatatca |
10400478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 33204312 - 33204351
Alignment:
| Q |
288 |
ctgtttagatcgacttattttagcttatctaccgacataa |
327 |
Q |
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| T |
33204312 |
ctgtttagatcgacttatttgagcttatctactgacataa |
33204351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 32769533 - 32769495
Alignment:
| Q |
286 |
gcctgtttagatcgacttattttagcttatctaccgaca |
324 |
Q |
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| T |
32769533 |
gcctgtttggattgacttattttagcttatctaccgaca |
32769495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 27317534 - 27317492
Alignment:
| Q |
285 |
agcctgtttagatcgacttattttagcttatctaccgacataa |
327 |
Q |
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| T |
27317534 |
agcctgtttggattgacttatttgagcttatctaccgacataa |
27317492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 10272347 - 10272391
Alignment:
| Q |
286 |
gcctgtttagatcgacttattttagcttatctaccgacataatca |
330 |
Q |
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|||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
10272347 |
gcctgtttagattgacttatcatagcttatctgccgacataatca |
10272391 |
T |
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