View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2488-Insertion-5 (Length: 278)

Name: NF2488-Insertion-5
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2488-Insertion-5
NF2488-Insertion-5
[»] scaffold0003 (2 HSPs)
scaffold0003 (28-278)||(42032-42284)
scaffold0003 (28-278)||(35362-35613)
[»] chr6 (4 HSPs)
chr6 (28-278)||(27445074-27445326)
chr6 (116-253)||(20909759-20909895)
chr6 (116-253)||(20924207-20924343)
chr6 (108-164)||(22081882-22081938)
[»] chr7 (2 HSPs)
chr7 (99-277)||(11504431-11504610)
chr7 (110-277)||(18939810-18939974)
[»] chr8 (2 HSPs)
chr8 (42-278)||(43227143-43227378)
chr8 (99-230)||(42312856-42312987)
[»] chr3 (2 HSPs)
chr3 (187-277)||(53690003-53690093)
chr3 (187-277)||(52310804-52310894)
[»] chr1 (1 HSPs)
chr1 (31-253)||(41326566-41326790)
[»] chr4 (2 HSPs)
chr4 (112-149)||(30180301-30180338)
chr4 (108-164)||(37618034-37618090)


Alignment Details
Target: scaffold0003 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 42032 - 42284
Alignment:
Q  28 aggaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgt 125  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||    
T  42032 aggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgt 42131  T
Q  126 caaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaagaagattcaaaaagcaa 225  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||        ||||| |||||||||||||||||||||||||||||||||    
T  42132 caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaa 42231  T
Q  226 gtgaactaaattttctcatagcatctttgtatagattttcaagctcactttgt 278  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  42232 gtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgt 42284  T

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Target: scaffold0003; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 35362 - 35613
Alignment:
Q  28 aggaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgt 125  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||    
T  35362 aggaaataatcgatcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgt 35461  T
Q  126 caaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaagaagattcaaaaagcaa 225  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||        ||||| |||||||||||||  ||||||||||||||||||    
T  35462 caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa-tttttttaacatagaacaccaaactcatagaagattcaaaaagcaa 35560  T
Q  226 gtgaactaaattttctcatagcatctttgtatagattttcaagctcactttgt 278  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  35561 gtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgt 35613  T

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Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 28 - 278
Target Start/End: Complemental strand, 27445326 - 27445074
Alignment:
Q  28 aggaaataatcgatcatagaatctaataaggtaatataacataacaacaaacac--gggacgaaagttagatatcttcgacaacaaagatatcttcctgt 125  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||  | |||||||| ||||||||||| ||| ||||||||||||    
T  27445326 aggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgt 27445227  T
Q  126 caaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaagaagattcaaaaagcaa 225  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||        ||||| |||||||||||||||||||||||||||||||||    
T  27445226 caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaa 27445127  T
Q  226 gtgaactaaattttctcatagcatctttgtatagattttcaagctcactttgt 278  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  27445126 gtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgt 27445074  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 20909759 - 20909895
Alignment:
Q  116 atcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaagaagatt 215  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||| ||| | |||||||| ||        ||| | |||||||||||| ||||||||||    
T  20909759 atcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggttt-aattttttctaacttagaacaccaaactataagaagatt 20909857  T
Q  216 caaaaagcaagtgaactaaattttctcatagcatcttt 253  Q
    ||||||||||||||| | ||| ||||| |||| |||||    
T  20909858 caaaaagcaagtgaattcaatgttctcgtagcctcttt 20909895  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 20924207 - 20924343
Alignment:
Q  116 atcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaagaagatt 215  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||| ||| | |||||||| ||        ||| | |||||||||||| ||||||||||    
T  20924207 atcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtggttt-aattttttctaacttagaacaccaaactataagaagatt 20924305  T
Q  216 caaaaagcaagtgaactaaattttctcatagcatcttt 253  Q
    ||||||||||||||| | ||| ||||| |||| |||||    
T  20924306 caaaaagcaagtgaattcaatgttctcgtagcctcttt 20924343  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 22081938 - 22081882
Alignment:
Q  108 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 164  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  22081938 acaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctat 22081882  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 99 - 277
Target Start/End: Complemental strand, 11504610 - 11504431
Alignment:
Q  99 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacac 198  Q
    |||||||  |||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||        ||||| ||||||    
T  11504610 tcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaaatttttttaacatagaacac 11504511  T
Q  199 caaactctaagaagattcaaaaagcaagtgaactaaatt-ttctcatagcatctttgtatagattttcaagctcactttg 277  Q
    ||||||||| ||| |||||||||||||||||| |  |||  ||||||||| ||||| |||||||||||||||||||||||    
T  11504510 caaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttcaagctcactttg 11504431  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 277
Target Start/End: Original strand, 18939810 - 18939974
Alignment:
Q  110 aaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaag 209  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||| |||||| |||  ||||| ||||          ||||| |||||| || |||||||    
T  18939810 aaagatatcttccttccaaacaacacttgattctaaaactcttgattcatcatatgttagtgttttt----ttttttaacatagaacacaaacctctaag 18939905  T
Q  210 aagattcaaaaagcaagtgaactaaatt-ttctcatagcatctttgtatagattttcaagctcactttg 277  Q
    || |||||||||||||||||| |   ||  ||||||||| ||||| |||||||||||||||||||||||    
T  18939906 aaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagattttcaagctcactttg 18939974  T

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Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 278
Target Start/End: Complemental strand, 43227378 - 43227143
Alignment:
Q  42 catagaatctaataaggtaatataacataacaacaaacacgggacga-aagttagatatcttcgacaacaaagatatcttcctgtcaaacaacatttgat 140  Q
    |||| ||||| |||| |||||||||||||| ||||||||||  |||  |||| | || ||||| || | | |||||||||||||||||| |||| |||||    
T  43227378 cataaaatctgataaagtaatataacataataacaaacacgctacgtcaagtaacatgtcttcaactatagagatatcttcctgtcaaagaacacttgat 43227279  T
Q  141 tctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaagaagattcaaaaagcaagtgaactaaattttc 240  Q
    ||||||||| |||||||||||||| ||||| |||||||        ||||| ||||||||||||| ||  ||||||||||| |||||||| | ||| |||    
T  43227278 tctaaaactcttgcttcatcctatggtagtagttttaa-tttttttaacatagaacaccaaactc-aatgagattcaaaaatcaagtgaattcaatgttc 43227181  T
Q  241 tcatagcatctttgtatagattttcaagctcactttgt 278  Q
    ||||||||||||| |||| ||| |||||||||||||||    
T  43227180 tcatagcatctttctatatattctcaagctcactttgt 43227143  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 42312856 - 42312987
Alignment:
Q  99 tcttcgacaacaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacac 198  Q
    |||||||  ||| ||| ||||||||||| ||||||| |||||||||| ||| |||||||||| ||| | |||||||| |         ||||| ||||||    
T  42312856 tcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggtttaatttttttctaacatagaacac 42312955  T
Q  199 caaactctaagaagattcaaaaagcaagtgaa 230  Q
    |||||| ||||||||| |||||||||||||||    
T  42312956 caaactataagaagatacaaaaagcaagtgaa 42312987  T

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Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 53690093 - 53690003
Alignment:
Q  187 aacattgaacaccaaactctaagaagattcaaaaagcaagtgaactaaattttctcatagcatctttgtatagattttcaagctcactttg 277  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||| |||||||||||||||||||||||    
T  53690093 aacatagaacaccaaactctaagaagattcaaaaagaaagtgaattcaatgttctcatagcatctttctatagattttcaagctcactttg 53690003  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 52310804 - 52310894
Alignment:
Q  187 aacattgaacaccaaactctaagaagattcaaaaagcaagtgaactaaattttctcatagcatctttgtatagattttcaagctcactttg 277  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| | ||| |||||||||| ||||| |||||||||||||||||||||||    
T  52310804 aacatagaacaccaaactctaagaagattcaaaaagaaagtgaatttaatgttctcatagcctctttctatagattttcaagctcactttg 52310894  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 41326566 - 41326790
Alignment:
Q  31 aaataatcgatcatagaatctaataaggtaatataacataacaacaaacacgggacga--aagttagatatcttcgacaacaaagatatcttcctgtcaa 128  Q
    |||||||  |||||||||| | |||| ||||||||||||||||| |||||| |    |  |||| |||  |||||||  ||| ||| ||||||||||| |    
T  41326566 aaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcga 41326665  T
Q  129 acaacatttgattctaaaactattgcttcatcctatagtagtggttttaannnnnnnnaacattgaacaccaaactctaagaagattcaaaaagcaagtg 228  Q
    |||| | |||||||||||||| |||||||||| ||| | |||||||| |         ||||| |||||||||||| |||||||||||||||||||||||    
T  41326666 acaaaacttgattctaaaactcttgcttcatcatatggcagtggtttaatttttttctaacatagaacaccaaactataagaagattcaaaaagcaagtg 41326765  T
Q  229 aactaaattttctcatagcatcttt 253  Q
    || | ||| |||| ||||| |||||    
T  41326766 aattcaatgttcttatagcctcttt 41326790  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 30180338 - 30180301
Alignment:
Q  112 agatatcttcctgtcaaacaacatttgattctaaaact 149  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaact 30180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 37618034 - 37618090
Alignment:
Q  108 acaaagatatcttcctgtcaaacaacatttgattctaaaactattgcttcatcctat 164  Q
    ||||||||| |||| |||||||||||  ||||||||||||||  | |||||||||||    
T  37618034 acaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctat 37618090  T

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