View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488R-Insertion-1 (Length: 825)
Name: NF2488R-Insertion-1
Description: NF2488R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488R-Insertion-1 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 777; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 9 - 825
Target Start/End: Complemental strand, 11904002 - 11903188
Alignment:
| Q |
9 |
cagagcactagtccacccttttgttgaacattactacatctctagcattcatcctgcaatctatagacgtagcaatggttgcctattccatctcaagcat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11904002 |
cagagcactagtccacccttttgttgaacattactacatctctagcattcatcctgcaatctatagacgtagcaatggttgcctattccatctcaagcat |
11903903 |
T |
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| Q |
109 |
cctacaactcattagcaccctaaaacctatacctactcgtttatcaggaatagatcacatcaacaatcttgaaaatattctcaaagaaatcaatgacaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
11903902 |
cctacaactcattagcaccctaaaacctatacctactcgtttatcaggaatagatcacatcaacaagcttgaagatattctcaaagaaatcaatgacaaa |
11903803 |
T |
|
| Q |
209 |
gtccagaaactgagctactcctccataggtgaaggacgtcttcttcctttgctgcaaaaggttagagacgtggtcatcgatttaaatgactcgatggagg |
308 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11903802 |
gtccagaaactgagctactcctccataggtgaagtacgtcttcttcctttgctgcaaaaggttagagacgtggtcatcgatttaaatgacttgatggagg |
11903703 |
T |
|
| Q |
309 |
ttctccgttacaacgagagtactactagtggctcaacaacagcgttcattgcattcggcctaaaaataaccaatcatttcaaagtcaagaaagccgcgga |
408 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903702 |
ttctccgttacaacgaaagtactactagtggctcaacaacagcgttcattgcattcggcctaaaaataaccaatcatttcaaagtcaagaaagccgcgga |
11903603 |
T |
|
| Q |
409 |
ggagttcaaacgcttgaccgaggtggatttaaagggattgtgtttgtcaatatctcaagaagcagcagaagcagcaacagaaacagttaatagtaacatg |
508 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903602 |
ggagttcaaacgcttgatcgaggtggatttaaagggattgtgtttgtcaatatctcaagaagcagcagaagcagcaacagaaacagttaatagtaacatg |
11903503 |
T |
|
| Q |
509 |
aagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctg |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903502 |
aagaatgtcaaaagaaattttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctg |
11903403 |
T |
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| Q |
609 |
atgatttcgttcctgttattgtcattgttggtgttcctgggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcatt |
708 |
Q |
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| T |
11903402 |
atgatttcgttcctgttattgtcattgttggtgttcct-ggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcatt |
11903304 |
T |
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| Q |
709 |
ttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgaccacagtcattgatggaagttgtac |
808 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11903303 |
ttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgaccacagtcattgatggaag-tgtac |
11903205 |
T |
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| Q |
809 |
gccgcctacttgtgctc |
825 |
Q |
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||||||||||||||||| |
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| T |
11903204 |
gccgcctacttgtgctc |
11903188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 554 - 762
Target Start/End: Original strand, 11730745 - 11730955
Alignment:
| Q |
554 |
gaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctgttattgtcattgttggtgttcctggga |
650 |
Q |
| |
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||||| || ||||| ||| || ||||||||||||| || |||||||| || |||||||||| ||| |||| ||||||||||||||||||| |||| |
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| T |
11730745 |
gaaaaagagaagaaagagcttgtagatcaactacttaacttgaacaattctactgatgattttcatgttggtgtttttgtcattgttggtgttcc-ggga |
11730843 |
T |
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| Q |
651 |
attgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatccgttctctccatgaaacct |
750 |
Q |
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|| ||||| |||||||||||| | ||||||||||| ||||| ||||||||||| ||||||| | |||||||||||||| | ||| || || |||| |
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| T |
11730844 |
atagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagcaaattttgggctacaaccaatttggatcgatcttctacacgagacct |
11730943 |
T |
|
| Q |
751 |
ttgatgtggaat |
762 |
Q |
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|||||||||||| |
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| T |
11730944 |
ttgatgtggaat |
11730955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 527 - 712
Target Start/End: Original strand, 11730274 - 11730461
Alignment:
| Q |
527 |
tttgagaaaattaccatggttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaaccctgctgatgatttc---gttcctg |
623 |
Q |
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||||||||| |||| ||||||| |||||| |||| ||||| ||||||||||||| |||||| |||| || ||| || |||||| ||| ||| || |
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| T |
11730274 |
tttgagaaagttactgtggttggaagagaatatgagaagaaagagattatagatcgactacttaagtggatcaaatctactgatgcttttcatgttggtg |
11730373 |
T |
|
| Q |
624 |
ttattgtcattgttggtgttcctgggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttgg |
712 |
Q |
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| T |
11730374 |
tttttgtcattgttggtgtttcagg-aataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagcaaattttgg |
11730461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 632 - 731
Target Start/End: Original strand, 11859136 - 11859234
Alignment:
| Q |
632 |
attgttggtgttcctgggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
731 |
Q |
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||||||||||||||||| |||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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| T |
11859136 |
attgttggtgttcctgg-aattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
11859234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 731
Target Start/End: Original strand, 12037924 - 12038032
Alignment:
| Q |
622 |
tgttattgtcattgttggtgttcctgggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaacc |
721 |
Q |
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||||||||| ||||||||||||||| |||||||| |||||||||||||| ||| ||||| || ||||| |||||| || ||||||| || |||| |
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| T |
12037924 |
tgttattgttattgttggtgttcct-ggaattggcaaaacaaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacc |
12038022 |
T |
|
| Q |
722 |
aatttggatc |
731 |
Q |
| |
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|||||||||| |
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| T |
12038023 |
aatttggatc |
12038032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 600
Target Start/End: Original strand, 11859049 - 11859104
Alignment:
| Q |
545 |
gttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaa |
600 |
Q |
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| T |
11859049 |
gttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaa |
11859104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 726
Target Start/End: Original strand, 11826968 - 11827061
Alignment:
| Q |
632 |
attgttggtgttcctgggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaattt |
726 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||| ||| ||||| || || || ||||||||||| |||||| ||||||| ||||| |
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| T |
11826968 |
attgttggtgttactgg-aattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaagcgaattttgaattcgaacaaattt |
11827061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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