View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2488R-Insertion-2 (Length: 815)

Name: NF2488R-Insertion-2
Description: NF2488R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2488R-Insertion-2
NF2488R-Insertion-2
[»] scaffold0003 (8 HSPs)
scaffold0003 (9-354)||(41667-42016)
scaffold0003 (9-347)||(35004-35346)
scaffold0003 (624-800)||(34658-34836)
scaffold0003 (624-800)||(41325-41506)
scaffold0003 (380-459)||(34871-34950)
scaffold0003 (387-459)||(41541-41613)
scaffold0003 (557-593)||(41497-41533)
scaffold0003 (557-593)||(34827-34863)
[»] chr6 (8 HSPs)
chr6 (9-354)||(27445342-27445691)
chr6 (27-354)||(20909306-20909632)
chr6 (27-354)||(20923754-20924080)
chr6 (624-800)||(27445852-27446033)
chr6 (387-459)||(27445745-27445817)
chr6 (366-438)||(20909203-20909274)
chr6 (366-438)||(20923651-20923722)
chr6 (557-593)||(27445825-27445861)
[»] chr8 (3 HSPs)
chr8 (27-354)||(42312420-42312746)
chr8 (366-479)||(42312276-42312388)
chr8 (366-445)||(15580653-15580733)
[»] chr2 (1 HSPs)
chr2 (624-800)||(14455466-14455643)
[»] chr1 (4 HSPs)
chr1 (46-354)||(41326204-41326511)
chr1 (384-479)||(47247043-47247137)
chr1 (366-476)||(41326063-41326172)
chr1 (274-354)||(47246912-47246992)
[»] chr7 (1 HSPs)
chr7 (27-156)||(11504728-11504856)
[»] chr3 (2 HSPs)
chr3 (133-232)||(50717647-50717745)
chr3 (133-232)||(50795103-50795201)


Alignment Details
Target: scaffold0003 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 42016 - 41667
Alignment:
Q  9 aaatctgcaatttttgtttga---ttcaaaaatatcatgtttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataac 105  Q
    |||||||||||||||||||||   ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || || |    
T  42016 aaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagc 41917  T
Q  106 tcatgttgttctgcatttaaaaaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgtta 205  Q
    |||||| |||||||||||||||||    |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||  |||||||||    
T  41916 tcatgtagttctgcatttaaaaagtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgtta 41817  T
Q  206 tcttactattgcttccttttctctccaaacagattttgctccagcagaaaacaaa-ttttcatatcagctctattgatgatttttccgaagtaatatttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  | | || |||| |||||| ||||||||||||||||||||||||    
T  41816 tcttactattgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatatttt 41717  T
Q  305 gatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 354  Q
    |||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  41716 gatttttggaagacttaaaatgacatccatccaagcttgagtgattcatc 41667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 35346 - 35004
Alignment:
Q  9 aaatctgcaatttttgtttga---ttcaaaaatatcatgtttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataac 105  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || ||||    
T  35346 aaatctgcaatttctgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactaac 35247  T
Q  106 tcatgttgttctgcatttaaaaaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgtta 205  Q
    ||||||  ||||||||||||||||    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||  |||||||||    
T  35246 tcatgtatttctgcatttaaaaagtaatagggcactctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgtta 35147  T
Q  206 tcttactattgcttccttttctctccaaacagattttgctccagcagaaaacaaa-ttttcatatcagctctattgatgatttttccgaagtaatatttt 304  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||  |   || |||| |||||| ||||||||||||||||||||||||    
T  35146 tcttactattgcttccttttctctccatacagattttgctccaacagaaaataaagatggtatgtcagttctattaatgatttttccgaagtaatatttt 35047  T
Q  305 gatttttgtaagactttaaatgacatccatccaagcttgagtg 347  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  35046 gatttttggaagacttaaaatgacatccatccaagcttgagtg 35004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 624 - 800
Target Start/End: Complemental strand, 34836 - 34658
Alignment:
Q  624 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 721  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||| ||    
T  34836 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgctgctatagtattatatagtacacagaaggaatactctaaaaatatataattatg 34737  T
Q  722 cacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaa 800  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34736 cacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgctttgctgtcaaagtttataaatgaa 34658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 624 - 800
Target Start/End: Complemental strand, 41506 - 41325
Alignment:
Q  624 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 721  Q
    |||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||  ||||| | ||||||||||||||||| |||||||| ||    
T  41506 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattatatagtacaaagaaggaatactctaaaaaaatataattatg 41407  T
Q  722 cacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaa 800  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    || ||||||||||||||||||||||||||||||    
T  41406 cacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaa 41325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 380 - 459
Target Start/End: Complemental strand, 34950 - 34871
Alignment:
Q  380 aactgggggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact 459  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  34950 aactgggggtgttcattccttgaagcatgaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact 34871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 387 - 459
Target Start/End: Complemental strand, 41613 - 41541
Alignment:
Q  387 ggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact 459  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  41613 ggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 41541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 593
Target Start/End: Complemental strand, 41533 - 41497
Alignment:
Q  557 tgctgctatattaattttgaagaattaaagtgctgct 593  Q
    |||||||||||||||||||||||||||||||||||||    
T  41533 tgctgctatattaattttgaagaattaaagtgctgct 41497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 593
Target Start/End: Complemental strand, 34863 - 34827
Alignment:
Q  557 tgctgctatattaattttgaagaattaaagtgctgct 593  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34863 tgctgctatattagttttgaagaattaaagtgctgct 34827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 27445342 - 27445691
Alignment:
Q  9 aaatctgcaatttttgtttga---ttcaaaaatatcatgtttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataac 105  Q
    |||||||||||||||||||||   ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || || |    
T  27445342 aaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagc 27445441  T
Q  106 tcatgttgttctgcatttaaaaaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgtta 205  Q
    |||||| |||||||||||||||||    |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||  |||||||||    
T  27445442 tcatgtagttctgcatttaaaaagtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgtta 27445541  T
Q  206 tcttactattgcttccttttctctccaaacagattttgctccagcagaaaacaaa-ttttcatatcagctctattgatgatttttccgaagtaatatttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  | | || |||| |||||| ||||||||||||||||||||||||    
T  27445542 tcttactattgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatatttt 27445641  T
Q  305 gatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 354  Q
    |||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  27445642 gatttttggaagacttaaaatgacatccatccaagcttgagtgattcatc 27445691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 20909632 - 20909306
Alignment:
Q  27 tgattcaaaaatatcatgtttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 126  Q
    |||||| |||| ||||| ||||||||||||||||||| |||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||    
T  20909632 tgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaa 20909533  T
Q  127 aaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgttatcttactattgcttccttttc 226  Q
    | | | || || |||||||||||| |||||||  |||   ||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||||||||    
T  20909532 a-gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttatcttgctattgcttccttttc 20909434  T
Q  227 tctccaaacagattttgctccagcagaaaacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatg 326  Q
    ||||||| ||||||||| ||||||||||||  ||   ||||||  | |||||| ||||  |||| |||||| |||||| || |||| |||||||||||||    
T  20909433 tctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtatttttatatttggaagactttaaatg 20909334  T
Q  327 acatccatccaagcttgagtgatccatc 354  Q
    | ||||||||||||||||||||| ||||    
T  20909333 aaatccatccaagcttgagtgattcatc 20909306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 20924080 - 20923754
Alignment:
Q  27 tgattcaaaaatatcatgtttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 126  Q
    |||||| |||| ||||| ||||||||||||||||||| |||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||    
T  20924080 tgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaa 20923981  T
Q  127 aaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgttatcttactattgcttccttttc 226  Q
    | | | || || |||||||||||| |||||||  |||   ||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||||||||    
T  20923980 a-gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttatcttgctattgcttccttttc 20923882  T
Q  227 tctccaaacagattttgctccagcagaaaacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatg 326  Q
    ||||||| ||||||||| ||||||||||||  ||   ||||||  | |||||| ||||  |||| |||||| |||||| || |||| |||||||||||||    
T  20923881 tctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtatttttatatttggaagactttaaatg 20923782  T
Q  327 acatccatccaagcttgagtgatccatc 354  Q
    | ||||||||||||||||||||| ||||    
T  20923781 aaatccatccaagcttgagtgattcatc 20923754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 624 - 800
Target Start/End: Original strand, 27445852 - 27446033
Alignment:
Q  624 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 721  Q
    |||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||  ||||| | ||||||||||||||||| |||||||| ||    
T  27445852 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattatatagtacaaagaaggaatactctaaaaaaatataattatg 27445951  T
Q  722 cacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaa 800  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    || ||||||||||||||||||||||||||||||    
T  27445952 cacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaa 27446033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 387 - 459
Target Start/End: Original strand, 27445745 - 27445817
Alignment:
Q  387 ggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact 459  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  27445745 ggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 27445817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 20909274 - 20909203
Alignment:
Q  366 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt 438  Q
    |||||||||| || |||||||||||||||||| ||||||| |||||||||||||   ||||||||||||||||    
T  20909274 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt 20909203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 20923722 - 20923651
Alignment:
Q  366 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt 438  Q
    |||||||||| || |||||||||||||||||| ||||||| |||||||||||||   ||||||||||||||||    
T  20923722 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt 20923651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 593
Target Start/End: Original strand, 27445825 - 27445861
Alignment:
Q  557 tgctgctatattaattttgaagaattaaagtgctgct 593  Q
    |||||||||||||||||||||||||||||||||||||    
T  27445825 tgctgctatattaattttgaagaattaaagtgctgct 27445861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 4e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 42312746 - 42312420
Alignment:
Q  27 tgattcaaaaatatcatgtttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 126  Q
    |||||| |||| |||| |||||||||||||||||||| |||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||    
T  42312746 tgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaa 42312647  T
Q  127 aaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgttatcttactattgcttccttttc 226  Q
    | | | || || ||| |||||||| |||||||  |||   |||||||||| |||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  42312646 a-gagaaatggaactatgaagcagaaattagcctacacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattgcttccttttc 42312548  T
Q  227 tctccaaacagattttgctccagcagaaaacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatg 326  Q
    ||||||| ||||||||| || |||||||||  ||   |||||| || |||||| ||||  ||||  ||||| |||||| ||||||| |||||||||||||    
T  42312547 tctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctaaagtagtatttttatttttggaagactttaaatg 42312448  T
Q  327 acatccatccaagcttgagtgatccatc 354  Q
    | ||||||||||||||||||||| ||||    
T  42312447 aaatccatccaagcttgagtgattcatc 42312420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 366 - 479
Target Start/End: Complemental strand, 42312388 - 42312276
Alignment:
Q  366 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagt 465  Q
    |||||||||  || |||||||||||||||||| |||||||||||||| ||||||   |||||||||||||||| | ||||||| |||||||||||||||     
T  42312388 actcttgctggacaaactgggggtgttcattcattgaagcaggaaaagaacaaaaa-tataaaaggtgactttctctgatgtagatgaaatactatgagc 42312290  T
Q  466 gaacttatacatgt 479  Q
    ||| ||||||||||    
T  42312289 gaaattatacatgt 42312276  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 15580733 - 15580653
Alignment:
Q  366 actcttgctataccaactgggggtgttcattccttgaagcaggaaaa-caacaaaggctataaaaggtgactttttatgat 445  Q
    |||||||||| |  |||||||| ||||| ||| || ||||||||||| |||||||||||| ||||||||||||||| ||||    
T  15580733 actcttgctagattaactggggttgttctttcattaaagcaggaaaagcaacaaaggctacaaaaggtgactttttctgat 15580653  T

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Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 624 - 800
Target Start/End: Complemental strand, 14455643 - 14455466
Alignment:
Q  624 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattata--gtacacaaaaggaatactctaaaaatatataattctg 721  Q
    ||||| |||||||||||||||||  |||||||||||||||||| |||||||||||||||||  ||||| | ||||| ||||||||||||||| |||| ||    
T  14455643 aagtgttgctatattaattttgattaagtcaaatcaaccaaagtgctgctatagtattatatagtacaaagaagga-tactctaaaaatataaaattatg 14455545  T
Q  722 cacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaa 800  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  14455544 cacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgcttttctgtcaaagtttataaatgaa 14455466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 9e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 46 - 354
Target Start/End: Complemental strand, 41326511 - 41326204
Alignment:
Q  46 ttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaaaaggggaagggcactctga 145  Q
    |||||||||||||||||| |||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||| | | || || |||||||    
T  41326511 ttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa-gagaaatggaactctga 41326413  T
Q  146 agcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgttatcttactattgcttccttttctctccaaacagattttgct 245  Q
    || || ||||  |  | |   |||||||||| |||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  41326412 agtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattgcttccttttctctccaatcagattttgtt 41326313  T
Q  246 ccagcagaaaacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatgacatccatccaagcttgag 345  Q
    |||||||||||  ||   |||||| || |||||| || |  |||| |||||| |||||| ||||||| |||| ||||||||| |||||||||||||||||    
T  41326312 ccagcagaaaatgaagaatcatattagttctattaataagctttctgaagtagtatttttatttttggaagaatttaaatgaaatccatccaagcttgag 41326213  T
Q  346 tgatccatc 354  Q
    |||| ||||    
T  41326212 tgattcatc 41326204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 384 - 479
Target Start/End: Original strand, 47247043 - 47247137
Alignment:
Q  384 gggggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagtgaacttatacatgt 479  Q
    |||||||||||||| |||||||||||||||||||||   |||||||||||||||| ||||||||| |||||||||||| || ||| ||||||||||    
T  47247043 gggggtgttcattcattgaagcaggaaaacaacaaaaa-tataaaaggtgactttctatgatgtagatgaaatactataagcgaaattatacatgt 47247137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 41326172 - 41326063
Alignment:
Q  366 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagt 465  Q
    |||||||||| || |||||||||||||||||| ||||||| |||||||||||||    ||||||||||||||| ||||||||| |||||| ||||||||     
T  41326172 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aaaataaaaggtgactttctatgatgtagatgaaaaactatgagc 41326074  T
Q  466 gaacttataca 476  Q
    ||| |||||||    
T  41326073 gaaattataca 41326063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 354
Target Start/End: Original strand, 47246912 - 47246992
Alignment:
Q  274 tctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 354  Q
    |||||| ||||  |||| |||||| |||||| ||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  47246912 tctattaatgagctttctgaagtagtatttttatttttggaaggctttaaatgaaatccatccaagcttgagtgattcatc 47246992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 11504728 - 11504856
Alignment:
Q  27 tgattcaaaaatatcatgtttgctcctatgcacaataggaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 126  Q
    |||||| |||| || |||||| ||||||||||||||| |||||   | ||||||||||  ||||||||||| || |||||||||| ||| | ||||| ||    
T  11504728 tgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcattt-aa 11504826  T
Q  127 aaggggaagggcactctgaagcagcaatta 156  Q
    ||||| || |||||||| ||||||||||||    
T  11504827 aagggaaatggcactctaaagcagcaatta 11504856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 50717647 - 50717745
Alignment:
Q  133 aagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgttatcttactattgcttccttttctctcca 232  Q
    |||||||| | ||| || ||||| || |||||  |||||||||||||| |||||||| | ||  |||||||||||||| ||||| ||||||||| |||||    
T  50717647 aagggcacaccgaatcatcaattcgccaacatattggtgtttgcatatttttttagttctttg-taagtgttatcttattattgattccttttcactcca 50717745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 50795201 - 50795103
Alignment:
Q  133 aagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagtgcattcataagtgttatcttactattgcttccttttctctcca 232  Q
    |||||||| | ||| || ||||| || |||||  |||||||||||||| |||||||| | ||  |||||||||||||| ||||| ||||||||| |||||    
T  50795201 aagggcacaccgaatcatcaattcgccaacatattggtgtttgcatatttttttagttctttg-taagtgttatcttattattgattccttttcactcca 50795103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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