View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2488R-Insertion-4 (Length: 487)

Name: NF2488R-Insertion-4
Description: NF2488R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2488R-Insertion-4
NF2488R-Insertion-4
[»] chr2 (1 HSPs)
chr2 (9-487)||(318963-319442)


Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Complemental strand, 319442 - 318963
Alignment:
Q  9 cttccaaactccattggaattccaccttcataggaattgtaatagcccaagtaaatctctctcaagttacttagattccccaactcgccagggattttac 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  319442 cttccaaactccattggaattccaccttcataggtattgtaatagcccaagtaaatctctctcaagttacttagattccccaactcgccagggattttac 319343  T
Q  109 cactaatatcatttccagctagtgaaagatactcaagagaaactaattttccataactttttggtatttcaccaaagaaaaagttaccacctagatccaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  319342 cactaatatcatttccagctagtgaaagatactcaagagaaactaattttccataactttttgggatttcaccaaagaaaaagttaccacctagatccaa 319243  T
Q  209 gtgtttgagcttgttcttcaaactaagaattcc-aatgggagcaaggaagtgaagttattgttatagacatccacaacctgtaagttttccatggttgag 307  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  319242 gtgtttgagcttgttcttcaaactaagaattcccaatgggagcaaggaagtgaagttattgttatagacatccacaacttgtaagttttccatggttgag 319143  T
Q  308 tagtaccaatccatgtggccactgaactggttattggagatgtttagaaattgaaggttggttaagtttgttatgtgaatggtgccggtgaagttgttgc 407  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  319142 tagttccaatccatgtggccactgaactggttattggagatgtttagaaattgaaggttggttaagtttgttatgtgaatggtgccggtgaagttgttgc 319043  T
Q  408 ctgcaagggaaaggtgtgagagtctatcaagtgatgaaattgaaggtgaaacagagccaaacagattcaaatctgttagg 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  319042 ctgcaagggaaaggtgtgagagtctatcaagtgatgaaattgaaggtgaaacagagccaaacagattcaaatctgttagg 318963  T

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