View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2488R-Insertion-6 (Length: 307)
Name: NF2488R-Insertion-6
Description: NF2488R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488R-Insertion-6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 47077313 - 47077612
Alignment:
| Q |
9 |
cttggtctattatttttccaattgagtaacaaatttactacaaacaaaatcatccatactannnnnnn-ctgtaagacatagacattaatcataggctta |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47077313 |
cttggtctattatttttccaattcagtaacaaatttactacaaacaaaatcatccatactattttttttctgtaagacatagacattaatcataggctta |
47077412 |
T |
|
| Q |
108 |
tcccgcaatatccgttcacgtggctgagtagtgtttggactcttactaagttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47077413 |
tcccgcaatatccgttcacgtggctgagtagtgtttggactcttactaatttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataat |
47077512 |
T |
|
| Q |
208 |
aatgtacttgttgttgttgatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcagccttttcatttcccttctccta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47077513 |
aatgtacttgttgttgttgatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcagccttttcatttcccttccccta |
47077612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University