View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488_high_4 (Length: 292)
Name: NF2488_high_4
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 44749244 - 44749020
Alignment:
| Q |
14 |
gagatgaatcaacaagattttgcactaggaaaatctaaaagaaatgtggtgtagtagaaacctgctaatagaatcacaatgttccctgaaagctgatttc |
113 |
Q |
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| T |
44749244 |
gagaagaatcaacaagattttgcactaggaaaatctaaaagaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttc |
44749145 |
T |
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| Q |
114 |
accaaagtaactgaataggttctttttaatagacctcaagtaaaattacaaagtaatactactagtcaactataggccgttattttttaactccattgta |
213 |
Q |
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| T |
44749144 |
acaaaagtaactgaataggttctttttaataaacctcaagtaaaattacaaaataatactactagtcaactataggccgttattttttaattccattgta |
44749045 |
T |
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| Q |
214 |
aagtacttaacttaaggttaagagg |
238 |
Q |
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| T |
44749044 |
aagtacttaacttaaggttaagagg |
44749020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 44748641 - 44748749
Alignment:
| Q |
19 |
gaatcaacaagattttgcactaggaaaatctaaaagaaatgtggtgtagtagaaacctgctaatagaatcacaatgttccctgaaagctgatttcaccaa |
118 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44748641 |
gaatcaacaagtttttgcactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaa |
44748740 |
T |
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| Q |
119 |
agtaactga |
127 |
Q |
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| T |
44748741 |
agtaactga |
44748749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 44748964 - 44748927
Alignment:
| Q |
239 |
aacacatcaatggtgagaagatttgaagaaggaagaca |
276 |
Q |
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| T |
44748964 |
aacacatcaacggtgagaagatttgaagaaggaagaca |
44748927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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