View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2488_high_5 (Length: 284)
Name: NF2488_high_5
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 819985 - 820138
Alignment:
| Q |
16 |
catcttgtgcttggattccttgtttcattttgtcaatgaactatttttcatgttaaaaagagatatattactaggatcatccactaactaacggacttaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
819985 |
catcttgtgcttggattccttgtttcattttgtcaatgaactatttttcatgttaaaaagagatatattactaggatcatccactaactaacggacttaa |
820084 |
T |
|
| Q |
116 |
ggattttggattaatttatgaatgactaatttaaacttagctacttacataagc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820085 |
ggattttggattaatttatgaatgactaatttaaacttagctacttacataagc |
820138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 816350 - 816489
Alignment:
| Q |
29 |
gattccttgtttcattttgtcaatgaactatttttcatgttaaaaagagatatattactaggatcatccactaactaacggacttaaggattttggatta |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
816350 |
gattccttgtctcattttgtcaatgaactatttttcttgttaacaaaagatatatcactaggatcatccactaactaaaggacttaaggatgttggatta |
816449 |
T |
|
| Q |
129 |
atttatgaatgactaatttaaacttagctacttacataag |
168 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
816450 |
gtttatgaatgactaatttaaatttagctacttacataag |
816489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 820214 - 820253
Alignment:
| Q |
245 |
cttgagaacctaggaaatagcgtatgccattctgtaaatt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820214 |
cttgagaacctaggaaatagcgtatgccattctgtaaatt |
820253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University