View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488_high_6 (Length: 250)
Name: NF2488_high_6
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 817220 - 817152
Alignment:
| Q |
147 |
accttacctccatacaaattaaacctaattgggatcagtcttaatagcaactgctacgtaaaatcttta |
215 |
Q |
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| T |
817220 |
accttacctccatacaaattaaacttagttgggatcattcttaataacaattgccacgtaaaatcttta |
817152 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 820514 - 820472
Alignment:
| Q |
208 |
aatctttatctttaattgattaaagccttttcctttttagggt |
250 |
Q |
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| T |
820514 |
aatctttatctttaattgattaaagccttttcctttttagggt |
820472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 817355 - 817273
Alignment:
| Q |
53 |
aaagaagattgtaaaattaatgtcagccacctccaacaccctt-gaaatgaaaataaaaaacagttagaaaaattcacatctaataaacaa |
142 |
Q |
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| T |
817355 |
aaagaagattgtaaaattaa------ccacctccaacacccttagaaat--aaaaaccaaacagttaggaaaattcacatctaataaacaa |
817273 |
T |
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