View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2488_low_1 (Length: 860)

Name: NF2488_low_1
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2488_low_1
NF2488_low_1
[»] chr1 (15 HSPs)
chr1 (312-844)||(15998353-15998885)
chr1 (1-314)||(15997895-15998208)
chr1 (758-845)||(15591238-15591324)
chr1 (758-844)||(16008992-16009077)
chr1 (257-326)||(14651769-14651838)
chr1 (257-326)||(14661560-14661629)
chr1 (413-467)||(14651587-14651641)
chr1 (413-467)||(14661378-14661432)
chr1 (773-828)||(15612793-15612848)
chr1 (801-843)||(10129971-10130013)
chr1 (415-473)||(17251580-17251638)
chr1 (765-843)||(19490084-19490162)
chr1 (801-846)||(4260440-4260485)
chr1 (801-846)||(4264062-4264107)
chr1 (803-844)||(15603304-15603345)
[»] chr6 (10 HSPs)
chr6 (768-843)||(29946271-29946346)
chr6 (761-841)||(30154336-30154416)
chr6 (777-840)||(24730692-24730755)
chr6 (801-843)||(29882269-29882311)
chr6 (801-843)||(29909425-29909467)
chr6 (801-843)||(29929107-29929149)
chr6 (415-469)||(29949571-29949625)
chr6 (415-469)||(29953368-29953422)
chr6 (777-846)||(29887128-29887197)
chr6 (801-846)||(30149358-30149403)
[»] scaffold0237 (1 HSPs)
scaffold0237 (801-846)||(22174-22219)
[»] chr3 (1 HSPs)
chr3 (768-843)||(24219325-24219400)
[»] chr2 (1 HSPs)
chr2 (777-843)||(15062975-15063041)
[»] scaffold0086 (1 HSPs)
scaffold0086 (801-846)||(31428-31473)


Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 312 - 844
Target Start/End: Original strand, 15998353 - 15998885
Alignment:
Q  312 gtatctgtaaagcattaaatagacctatagcaaacattggaagaagagttttctctgcttaatcattctcacctgtttcaaaaatggaagcaaatcgttc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998353 gtatctgtaaagcattaaatagacctatagcaaacattggaagaagagttttctctgcttaatcattctcacctgtttcaaaaatggaagcaaatcgttc 15998452  T
Q  412 atatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaagccccccattgatcatagtcatatacttcacgacatctttaa 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15998453 atatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaagcaccccattgatcatagtcatatacttcacgacatctttaa 15998552  T
Q  512 tcaaaagttctcaaaaaacttatttaagtcttacacctttgacaaaccaagcatattatgtgtacaaatccagttgaatgctttggtctttaattttgcg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||     
T  15998553 tcaaaagttctcaaaaaacttatttaagtcttacacctttgacaaaccaagcatattatgtgtacaaatccggttgaatgccttggtctttaattttgca 15998652  T
Q  612 caaagtatgtaataaagaattgtaaacgatgacaatagtttgttgacctccattatgcatcttaccaacaagcttccacgcataacagattttctctcat 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998653 caaagtatgtaataaagaattgtaaacgatgacaatagtttgttgacctccattatgcatcttaccaacaagcttccacgcataacagattttctctcat 15998752  T
Q  712 ttgcacaagtcatctataatattgttgtacgttattattgcataaagaatcaaatttttggaatacatttcttcaaagacattcacgatttcatccacta 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998753 ttgcacaagtcatctataatattgttgtacgttattattgcataaagaatcaaatttttggaatacatttcttcaaagacattcacgatttcatccacta 15998852  T
Q  812 ttttaatcttacataattcattaatcatgatat 844  Q
    |||||||||||||||||||||||||||||||||    
T  15998853 ttttaatcttacataattcattaatcatgatat 15998885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 15997895 - 15998208
Alignment:
Q  1 atgatttgaactcaaacaggactacaagaaaattgcagcaaactgaataaaataaatctactaactataagaaataatgaattccagagtaaagacaatc 100  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15997895 atgatttgaactcaaacaggactaccagaaaattgcagtaaactgaataaaataaatctactaactataagaaataatgaattacagagtaaagacaatc 15997994  T
Q  101 atgtcattatttgaaacactaaaaacgaccactgcatgataaattcttttaaagttgatatagcagatcaagaatacaatgggaagaaagagggttatta 200  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15997995 atgtcattatttgaaacgccaaaaacgaccactgcatgataaattcttttaaagttgatatagcagatcaagaatacaatgggaagaaagagggttatta 15998094  T
Q  201 cttcaagacttgaaaaatcatagtgaccctactacattatacatctttaatgtgagtaactatcaaaagaaaaagacactagatggcagccattcaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998095 cttcaagacttgaaaaatcatagtgaccctactacattatacatctttaatgtgagtaactatcaaaagaaaaagacactagatggcagccattcaaatc 15998194  T
Q  301 taaaacaacatgta 314  Q
    ||||||||||||||    
T  15998195 taaaacaacatgta 15998208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 758 - 845
Target Start/End: Complemental strand, 15591324 - 15591238
Alignment:
Q  758 gaatcaaatttttggaatacatttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatgatatt 845  Q
    |||||| |||||||||||||||||||||    | |||||  | |||||||||||||||||||||||||||| ||||||||||| ||||    
T  15591324 gaatcatatttttggaatacatttcttcctcaa-attcataacttcatccactattttaatcttacataatccattaatcatggtatt 15591238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 758 - 844
Target Start/End: Original strand, 16008992 - 16009077
Alignment:
Q  758 gaatcaaatttttggaatacatttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatgatat 844  Q
    |||||| ||||||||||||||||||| |||||| |||||    |||||| || || ||||||||||||||| |||||||||||||||    
T  16008992 gaatcatatttttggaatacatttct-caaagagattcaaagcttcatctacaatgttaatcttacataatccattaatcatgatat 16009077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 14651838 - 14651769
Alignment:
Q  257 taactatcaaaagaaaaagacactagatggcagccattcaaatctaaaacaacatgtatctgtaaagcat 326  Q
    |||||||||||||||||||| ||| |||||  |||||| ||||||||||||| ||||||||  |||||||    
T  14651838 taactatcaaaagaaaaagagactcgatggttgccattaaaatctaaaacaagatgtatctagaaagcat 14651769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 14661629 - 14661560
Alignment:
Q  257 taactatcaaaagaaaaagacactagatggcagccattcaaatctaaaacaacatgtatctgtaaagcat 326  Q
    |||||||||||||||||||| ||| |||||  |||||| ||||||||||||| ||||||||  |||||||    
T  14661629 taactatcaaaagaaaaagagactcgatggttgccattaaaatctaaaacaagatgtatctagaaagcat 14661560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 14651641 - 14651587
Alignment:
Q  413 tatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttaca 467  Q
    ||||||||||||||||||||||   ||| ||||||||||| ||||||||||||||    
T  14651641 tatcttccatttttgacagcaaaacaaacgcttcttcaaacaaaccctctttaca 14651587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 14661432 - 14661378
Alignment:
Q  413 tatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttaca 467  Q
    ||||||||||||||||||||||   ||| ||||||||||| ||||||||||||||    
T  14661432 tatcttccatttttgacagcaaaacaaacgcttcttcaaacaaaccctctttaca 14661378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 828
Target Start/End: Complemental strand, 15612848 - 15612793
Alignment:
Q  773 aatacatttcttcaaagacattcacgatttcatccactattttaatcttacataat 828  Q
    |||||||||||||||||| ||||| | ||||||  || ||||||||||||||||||    
T  15612848 aatacatttcttcaaagagattcatggtttcatataccattttaatcttacataat 15612793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 843
Target Start/End: Complemental strand, 10130013 - 10129971
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgata 843  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  10130013 ttcatccaccattttaatcttacaaaatccattaatcatgata 10129971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 17251638 - 17251580
Alignment:
Q  415 tcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaagccc 473  Q
    |||||||||||||||||||||   |||||||| ||||| || | |||||||||||||||    
T  17251638 tcttccatttttgacagcaaggtcaatgcttcatcaaacaagctctctttacaaagccc 17251580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 765 - 843
Target Start/End: Complemental strand, 19490162 - 19490084
Alignment:
Q  765 atttttggaatacatttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatgata 843  Q
    |||| |||||| |||||||||||||| | | ||   ||||||||  ||||| |||||||||||| ||||||||||||||    
T  19490162 atttgtggaatgcatttcttcaaagagacttaccgcttcatccaacattttcatcttacataatccattaatcatgata 19490084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 846
Target Start/End: Original strand, 4260440 - 4260485
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgatattg 846  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||||    
T  4260440 ttcatccaccattttcattttacaaaattcattaatcatgatattg 4260485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 846
Target Start/End: Original strand, 4264062 - 4264107
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgatattg 846  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||||    
T  4264062 ttcatccaccattttcattttacaaaattcattaatcatgatattg 4264107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 803 - 844
Target Start/End: Complemental strand, 15603345 - 15603304
Alignment:
Q  803 catccactattttaatcttacataattcattaatcatgatat 844  Q
    |||| ||||||||||||||||||||| |||||||||| ||||    
T  15603345 catcaactattttaatcttacataatccattaatcatcatat 15603304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 768 - 843
Target Start/End: Complemental strand, 29946346 - 29946271
Alignment:
Q  768 tttggaatacatttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatgata 843  Q
    |||| ||| |||||||||||||| ||||| |  ||||||||| |||||||||||||| ||| ||||||||||||||    
T  29946346 tttgcaatgcatttcttcaaagagattcatggcttcatccaccattttaatcttacaaaatccattaatcatgata 29946271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 761 - 841
Target Start/End: Complemental strand, 30154416 - 30154336
Alignment:
Q  761 tcaaatttttggaatacatttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatga 841  Q
    ||||| ||||||||| |||||||| ||||| | ||||   ||||||||| ||||||| |||||||||| ||||||||||||    
T  30154416 tcaaacttttggaatgcatttctttaaagagaatcacagcttcatccaccattttaaccttacataatccattaatcatga 30154336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 777 - 840
Target Start/End: Complemental strand, 24730755 - 24730692
Alignment:
Q  777 catttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatg 840  Q
    |||||||||||||| ||| ||   ||||||||| |||||||||||||||||| |||||||||||    
T  24730755 catttcttcaaagagatttacagcttcatccaccattttaatcttacataatccattaatcatg 24730692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 843
Target Start/End: Complemental strand, 29882311 - 29882269
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgata 843  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  29882311 ttcatccaccattttaatcttacaaaatccattaatcatgata 29882269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 843
Target Start/End: Complemental strand, 29909467 - 29909425
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgata 843  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  29909467 ttcatccaccattttaatcttacaaaatccattaatcatgata 29909425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 843
Target Start/End: Complemental strand, 29929149 - 29929107
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgata 843  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  29929149 ttcatccaccattttaatcttacaaaatccattaatcatgata 29929107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 469
Target Start/End: Original strand, 29949571 - 29949625
Alignment:
Q  415 tcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaa 469  Q
    ||||||||||||||||| ||| | ||||| || ||||||||||| ||||||||||    
T  29949571 tcttccatttttgacagtaaggacaatgcctcgtcaaataaaccttctttacaaa 29949625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 469
Target Start/End: Original strand, 29953368 - 29953422
Alignment:
Q  415 tcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaa 469  Q
    ||||||||||||||||| ||| | ||||| || ||||||||||| ||||||||||    
T  29953368 tcttccatttttgacagtaaggacaatgcctcgtcaaataaaccttctttacaaa 29953422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 846
Target Start/End: Complemental strand, 29887197 - 29887128
Alignment:
Q  777 catttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatgatattg 846  Q
    |||||||||||||| ||||| |  ||||||    |||||||||||||| ||| |||||||||||||||||    
T  29887197 catttcttcaaagagattcatggcttcatcggtcattttaatcttacaaaatccattaatcatgatattg 29887128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 846
Target Start/End: Complemental strand, 30149403 - 30149358
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgatattg 846  Q
    ||||||||| |||||| ||||||||||| | |||||||||||||||    
T  30149403 ttcatccaccattttattcttacataatccgttaatcatgatattg 30149358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 801 - 846
Target Start/End: Complemental strand, 22219 - 22174
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgatattg 846  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||    
T  22219 ttcatccaccattttaatcttacaaaatccattaatcatgatattg 22174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 843
Target Start/End: Original strand, 24219325 - 24219400
Alignment:
Q  768 tttggaatacatttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatgata 843  Q
    |||| ||| ||||||||||||||  |||| |  ||||||||| |||||||||||||| ||| || |||||||||||    
T  24219325 tttgcaatgcatttcttcaaagagtttcatggcttcatccaccattttaatcttacaaaatccactaatcatgata 24219400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 777 - 843
Target Start/End: Original strand, 15062975 - 15063041
Alignment:
Q  777 catttcttcaaagacattcacgatttcatccactattttaatcttacataattcattaatcatgata 843  Q
    ||||||||||||||  |||| |  |||||| || |||||||||||||| ||| ||||||||||||||    
T  15062975 catttcttcaaagagcttcatggcttcatctaccattttaatcttacaaaatccattaatcatgata 15063041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 846
Target Start/End: Original strand, 31428 - 31473
Alignment:
Q  801 ttcatccactattttaatcttacataattcattaatcatgatattg 846  Q
    |||||| || |||||||||||||||||| ||||||| |||||||||    
T  31428 ttcatcaacaattttaatcttacataatccattaataatgatattg 31473  T

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