View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488_low_12 (Length: 227)
Name: NF2488_low_12
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488_low_12 |
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| [»] chr5 (6 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 37842411 - 37842632
Alignment:
| Q |
6 |
aatttgttctatgggttgaatttgagtgctaatggattgacaggtgccattccagcagaaatcgggaaactaaaaatgctgcaaagtctggatatatcct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37842411 |
aatttgttctatgggttgaatttgagtgctaatggattgataggtggcattcctgtagaaattcagaaactaaaaatgctgcaaagtctggatatatcct |
37842510 |
T |
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| Q |
106 |
tgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacagg |
205 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||| |
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| T |
37842511 |
tgaacaatttgacgggaagcatagacgcacttggaagtcttgtttcattaattgaggtcaatatttctcacaatctcttcaatggttctgtaccaacagg |
37842610 |
T |
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| Q |
206 |
tctattgaagttattgaattcc |
227 |
Q |
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|||| ||||||||||||||||| |
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| T |
37842611 |
tctaatgaagttattgaattcc |
37842632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 37831092 - 37831309
Alignment:
| Q |
10 |
tgttctatgggttgaatttgagtgctaatggattgacaggtgccattccagcagaaatcgggaaactaaaaatgctgcaaagtctggatatatccttgaa |
109 |
Q |
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|||||||||| |||||| ||||| |||||||||| ||||| |||||| ||||||| ||||| ||| | |||||||||||||||||||||||||||| |
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| T |
37831092 |
tgttctatggattgaatctgagttctaatggattaacaggcagcattccttcagaaattgggaagctaggactgctgcaaagtctggatatatccttgaa |
37831191 |
T |
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| Q |
110 |
caacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtcta |
209 |
Q |
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| T |
37831192 |
caatttaacaggaagcatatatgctcttgaaagtcttgtttcgttaactgatatcaatgtttcttacaatctcttcaatggttctgtaccaacaggtcta |
37831291 |
T |
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| Q |
210 |
ttgaagttattgaattcc |
227 |
Q |
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|||||||| |||||||| |
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| T |
37831292 |
atgaagttactgaattcc |
37831309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 37836792 - 37837013
Alignment:
| Q |
6 |
aatttgttctatgggttgaatttgagtgctaatggattgacaggtgccattccagcagaaatcgggaaactaaaaatgctgcaaagtctggatatatcct |
105 |
Q |
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|||||||||||||| ||||| |||||| ||||||||||||||||| |||||| | ||||| || ||| | ||||||||||||| |||||||||| |
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| T |
37836792 |
aatttgttctatggactgaatctgagtggtaatggattgacaggtggcattccttcggaaattggtttactcggactgctgcaaagtctagatatatcct |
37836891 |
T |
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| Q |
106 |
tgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacagg |
205 |
Q |
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| ||||| || |||||||||||||| || |||||| |||||||||||||||||||| | |||||||||| ||||||||||||||| ||| |||||||||| |
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| T |
37836892 |
taaacaatttaacaggaagcatagatgctcttggaggtcttgtttcattaattgaggtcaatatttctttcaatctcttcaatggatctgtaccaacagg |
37836991 |
T |
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| Q |
206 |
tctattgaagttattgaattcc |
227 |
Q |
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|||| ||| ||||||||||||| |
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| T |
37836992 |
tctaatgaggttattgaattcc |
37837013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 37850250 - 37850392
Alignment:
| Q |
85 |
tgcaaagtctggatatatccttgaacaacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctctt |
184 |
Q |
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|||||||||| ||||||||||||||||| || |||||||||||||| || ||||| |||||||||||||||||||| | |||||||||| ||||||||| |
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| T |
37850250 |
tgcaaagtctagatatatccttgaacaatttaacaggaagcatagatgcccttggtggtcttgtttcattaattgaggtcaatatttctttcaatctctt |
37850349 |
T |
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| Q |
185 |
caatggttctataccaacaggtctattgaagttattgaattcc |
227 |
Q |
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| T |
37850350 |
ccatggttctgtaccaaaaggtctaatgaatttattgaattcc |
37850392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 28089393 - 28089502
Alignment:
| Q |
118 |
caggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtctattgaagtt |
217 |
Q |
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|||||| ||| || || |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||| || |||| ||| || |
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| T |
28089393 |
caggaatcatcgatgctcttggagatcttgtttcattaattgaggtcaatatttcttacaatctcttcaatggttttgtaccattagctctaatgagttt |
28089492 |
T |
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| Q |
218 |
attgaattcc |
227 |
Q |
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|||||||||| |
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| T |
28089493 |
attgaattcc |
28089502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 37850164 - 37850217
Alignment:
| Q |
5 |
caatttgttctatgggttgaatttgagtgctaatggattgacaggtgccattcc |
58 |
Q |
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|||| |||||||||| |||||| | |||||||||||||||| ||||| |||||| |
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| T |
37850164 |
caatctgttctatggattgaatcttagtgctaatggattgaaaggtgacattcc |
37850217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 36865543 - 36865760
Alignment:
| Q |
10 |
tgttctatgggttgaatttgagtgctaatggattgacaggtgccattccagcagaaatcgggaaactaaaaatgctgcaaagtctggatatatccttgaa |
109 |
Q |
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|||| ||||| |||||| |||||| ||||||||||||||||| ||||| ||||||| |||| ||| | |||||||||| |||||||||||||||| |
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| T |
36865543 |
tgttttatggattgaatctgagtgataatggattgacaggtggtattccttcagaaattgggatgctaggactgctgcaaagcttggatatatccttgaa |
36865642 |
T |
|
| Q |
110 |
caacttgacaggaagcatagacgcacttggaagtcttgtttcattaattgagattaatatttcttacaatctcttcaatggttctataccaacaggtcta |
209 |
Q |
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||| ||||||||||||||||| || |||| | |||||||||||||||||||| | ||||||| ||||||||| |||||||||||| |||||||| ||||| |
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| T |
36865643 |
caatttgacaggaagcatagatgctcttgaaggtcttgtttcattaattgaggtcaatatttattacaatcttttcaatggttctgtaccaacacgtcta |
36865742 |
T |
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| Q |
210 |
ttgaagttattgaattcc |
227 |
Q |
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| | ||||||||||||| |
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| T |
36865743 |
attaggttattgaattcc |
36865760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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