View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488_low_3 (Length: 376)
Name: NF2488_low_3
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 11903654 - 11904002
Alignment:
| Q |
12 |
atgaacgctgttgttgagccactagtagtactctcgttgtaacggagaacctccatcgagtcatttaaatcgatgaccacgtctctaaccttttgcagca |
111 |
Q |
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| T |
11903654 |
atgaacgctgttgttgagccactagtagtactttcgttgtaacggagaacctccatcaagtcatttaaatcgatgaccacgtctctaaccttttgcagca |
11903753 |
T |
|
| Q |
112 |
aaggaagaagacgtccttcacctatggaggagtagctcagtttctggactttgtcattgatttctttgagaatattttcaagattgttgatgtgatctat |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
11903754 |
aaggaagaagacgtacttcacctatggaggagtagctcagtttctggactttgtcattgatttctttgagaatatcttcaagcttgttgatgtgatctat |
11903853 |
T |
|
| Q |
212 |
tcctgataaacgagtaggtataggttttagggtgctaatgagttgtaggatgcttgagatggaataggcaaccattgctacgtctatagattgcaggatg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903854 |
tcctgataaacgagtaggtataggttttagggtgctaatgagttgtaggatgcttgagatggaataggcaaccattgctacgtctatagattgcaggatg |
11903953 |
T |
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| Q |
312 |
aatgctagagatgtagtaatgttcaacaaaagggtggactagtgctctg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903954 |
aatgctagagatgtagtaatgttcaacaaaagggtggactagtgctctg |
11904002 |
T |
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