View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488_low_5 (Length: 327)
Name: NF2488_low_5
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488_low_5 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 140 - 312
Target Start/End: Complemental strand, 40889598 - 40889422
Alignment:
| Q |
140 |
agtggtaaactagtcttacctattctactaacgcaacacctgagaccaatagcatagttatatgatttacttttatttgaaaagtagaaaggggttagta |
239 |
Q |
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| T |
40889598 |
agtggtaaactagtcttacctattctactaacgcaacacctgataccaatagcatagttatatgatttacttttatttgaaaagtagaaaggggttagta |
40889499 |
T |
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| Q |
240 |
aggttcttttgtgtgcagaatcaagttaatttctcaaaaataaattaagaaggt----tttaagaaaagaaataatt |
312 |
Q |
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| T |
40889498 |
aggttcttttgtgtgcagaatcaagttaatttctcaaaaataaattaagaaggtttaatttaagaaaagaaataatt |
40889422 |
T |
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Target: scaffold0221 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 25202 - 25160
Alignment:
| Q |
38 |
tcgacgtggttctctcaagcgccctagtatactctacttgttc |
80 |
Q |
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| T |
25202 |
tcgacatggttctctcaagcgccctagtatactctacttgttc |
25160 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 11593153 - 11593117
Alignment:
| Q |
103 |
gtcagttcaccgggaggatcgccctcccaattcgaag |
139 |
Q |
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| T |
11593153 |
gtcagttcattgggaggatcgccctcccaattcgaag |
11593117 |
T |
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