View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2488_low_6 (Length: 324)
Name: NF2488_low_6
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2488_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 14334146 - 14333842
Alignment:
| Q |
14 |
ataatactctttagaaacatacacaaacccaaaaacaccaataaaacaaattgatttaattcatatacaccatcggatcgttaattggttgtgatttgtt |
113 |
Q |
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| T |
14334146 |
ataatactctttagaaacatacataaacccaaaaacaccaataaaacaaattgatataattcatatacaccatcggatcgttaattggttgtgatttgtt |
14334047 |
T |
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| Q |
114 |
gacagtataaaactttctacctagaccatgtatcaaaat------------aaataacactacatcatatcataattcaaatggagtggcaaactttacc |
201 |
Q |
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| T |
14334046 |
gacagtataaaactttctacctagaccatgtatcaaaattaaactcaaaataaataacactacatcatatcataattcaaatggagtaccaaactttacc |
14333947 |
T |
|
| Q |
202 |
attttggagacacatttggatagagaaacagcagctttagccctgatcctaaggtttttgtgactcacagataaccttagtttctgaagcaatggaagag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14333946 |
attttggagacacatttggatagagaaacagcagctttagccctgatcctaaggtttttgtgactcacagataaccttagtttctgaagcaatggaagag |
14333847 |
T |
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| Q |
302 |
gtgtc |
306 |
Q |
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||||| |
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| T |
14333846 |
gtgtc |
14333842 |
T |
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