View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2488_low_7 (Length: 309)

Name: NF2488_low_7
Description: NF2488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2488_low_7
NF2488_low_7
[»] chr1 (1 HSPs)
chr1 (1-297)||(47077319-47077616)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 47077319 - 47077616
Alignment:
Q  1 ctattatttttccaattgagtaacaaatttactacaaacaaaatcatccatactannnnnnn-ctgtaagacatagacattaatcataggcttatcccgc 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  47077319 ctattatttttccaattcagtaacaaatttactacaaacaaaatcatccatactattttttttctgtaagacatagacattaatcataggcttatcccgc 47077418  T
Q  100 aatatccgttcacgtggctgagtagtgtttggactcttactaagttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataataatgta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47077419 aatatccgttcacgtggctgagtagtgtttggactcttactaatttacatacacttaaattcttatgatcgcattttccaaaaaatgtgataataatgta 47077518  T
Q  200 cttgttgttgttgatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcagccttttcatttcccttctcctatctg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47077519 cttgttgttgttgatgtaatactctcctctatagtccttctcctattcagcttaatatatccttcactgcagccttttcatttcccttcccctatctg 47077616  T

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