View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2489_high_1 (Length: 451)
Name: NF2489_high_1
Description: NF2489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2489_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 36992529 - 36992959
Alignment:
| Q |
8 |
ataattctggatttccaaatatcgaaactgaaagagttgactatgaatttgagctgtannnnnnnnnnnncataataagactttattgagctgtacattt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36992529 |
ataattctggatttccaaatatcgaaactgaaagagttgactatgaatttgagctgtattttttgtttttcataataagactttattgagctgtacattt |
36992628 |
T |
|
| Q |
108 |
tnnnnnnnnnnnnnnnnnnnnnnnntatcgtcatttagcacactgaaatcatgtttttccctcctagcttattgactttctatgcttaaacacttcaaaa |
207 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36992629 |
taaaaataaaataaaaagaaaaaaatatcgtcatttagcacactgaaatcatgtttttccctcctagcttattgtctttctatgcttaaacacttcaaaa |
36992728 |
T |
|
| Q |
208 |
ccaatgtccaatacacacttatgtcgacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992729 |
ccaatgtccaatacacacttatgtcgacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgtt |
36992828 |
T |
|
| Q |
308 |
gctgtcagtatgtgcatattataatgtaacatggaaatatcagattaaatattcaatcacaattttgaaaagctacaaattcaactaacaaaatatccat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36992829 |
gctgtcagtatgtgcatattataatgtaacatggaaatatcagattaaatattcaatcacaattttgaaaacctacaaattcaactaacaaaatatccat |
36992928 |
T |
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| Q |
408 |
ataaacccatctttgttattgtcattaagtg |
438 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
36992929 |
ataaactcatctttgttattgtcattaagtg |
36992959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 37017969 - 37018399
Alignment:
| Q |
8 |
ataattctggatttccaaatatcgaaactgaaagagttgactatgaatttgagctgtannnnnnnnnnnncataataagactttattgagctgtacattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37017969 |
ataattctggatttccaaatatcgaaactgaaagagttgactatgaatttgagctgtattttttgtttttcataataagactttattgagctgtacattt |
37018068 |
T |
|
| Q |
108 |
tnnnnnnnnnnnnnnnnnnnnnnnntatcgtcatttagcacactgaaatcatgtttttccctcctagcttattgactttctatgcttaaacacttcaaaa |
207 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37018069 |
taaaaataaaataaaaagaaaaaaatatcgtcatttagcacactgaaatcatgtttttccctcctagcttattgtctttctatgcttaaacacttcaaaa |
37018168 |
T |
|
| Q |
208 |
ccaatgtccaatacacacttatgtcgacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37018169 |
ccaatgtccaatacacacttatgtcgacattttacgacattgtatagtctaataaaataaataacaagccatatgaacggaaacaaattccatctttgtt |
37018268 |
T |
|
| Q |
308 |
gctgtcagtatgtgcatattataatgtaacatggaaatatcagattaaatattcaatcacaattttgaaaagctacaaattcaactaacaaaatatccat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
37018269 |
gctgtcagtatgtgcatattataatgtaacatggaaatatcagattaaatattcaatcacaattttgaaaacctacaaattcaactaacaaaatatccat |
37018368 |
T |
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| Q |
408 |
ataaacccatctttgttattgtcattaagtg |
438 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
37018369 |
ataaactcatctttgttattgtcattaagtg |
37018399 |
T |
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