View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2489_high_2 (Length: 439)
Name: NF2489_high_2
Description: NF2489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2489_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 51677319 - 51676906
Alignment:
| Q |
8 |
gacatcatcacacacacttgatttccaatatattgtatttatttattttttgctaagaagtttataaattctttatcataaaccatcatataggacagtt |
107 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51677319 |
gacataatcagacacaattgatttccaatatattgtatttatttattttttgctaagaagtttataaattctttatcataaaccat---ataggacagtt |
51677223 |
T |
|
| Q |
108 |
taccacctagcaattatagaattacagtgtcatacgcctttctttaaaaagttttacctcctatcccaattatttccctatcaattgatgaggcaggact |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51677222 |
taccacctagcaattatagaattacagtgtcatacgcctttctttaaaaagttttacctcccatcccaattatttccctatcaattgatgaggcaggact |
51677123 |
T |
|
| Q |
208 |
acaaaaagggtggattctcaatgttggacgtttgagagaaagaaagggcataaccaaggacctcactaagacaca--cacagacacagctaggtaggagg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
51677122 |
acaaaaagggtggattctcaatgttggacgtttgagagaaagaaagggcataaccaaggacctcactaagacacacacacagacacagctaggt---agg |
51677026 |
T |
|
| Q |
306 |
agtatctcgtttattgagcctcctcagaaactacaagttgcatatatcatataatagggacaaatcttaaactgcaggcaatggcatacagttattacca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51677025 |
agtatctcgtttattgagcctcctcagaaactacaagttgcatatatcatataatagggacaaatcttaaactgcaggcaatggcatacagttattacca |
51676926 |
T |
|
| Q |
406 |
cggcccgcacagagcaaact |
425 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51676925 |
cggcccgcacagagcaaact |
51676906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University