View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2489_low_1 (Length: 465)
Name: NF2489_low_1
Description: NF2489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2489_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 55341276 - 55341661
Alignment:
| Q |
17 |
aaggaattaggccagctctgcatccatttcattatataactatccagtttttggattagagacatcataattcatttactaggagcttttttatgcagca |
116 |
Q |
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| T |
55341276 |
aaggagttaggccagctcggcatccatttcattatataactaaccagtttttggattagagacatcataattcatttactaggagcttttttatgcagca |
55341375 |
T |
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| Q |
117 |
gcttctcaactttgagcacagtggttagcatcaaaaagacaaaaaccagaacagacacaatacatatcaccagcattaaagcagaggccatactactttt |
216 |
Q |
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| T |
55341376 |
gcttctcaactttgagcacagtggttagcatcaaaaagacaaaaaccagaacagacacaatacatatcaccagcattaaagcagaggccatactactttt |
55341475 |
T |
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| Q |
217 |
cacctcatgagcacattcagcacaagctaaaccaaggaatgttaaagggaatgagtaaatccaccatgtaacgtttaaccttctcatagttttcttgaac |
316 |
Q |
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| T |
55341476 |
cacctcatgagcatattcagcacaagctaaaccaaggaatgttaaagggaatgagtaaatccaccatgtaacgtttaaccttttcatagttttcttgaac |
55341575 |
T |
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| Q |
317 |
agtgctggtctgcaagcctgcattatacaagccttgatcattaaaatgaaagggatgattaaaataaccaattaaatatatatata |
402 |
Q |
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| T |
55341576 |
agtgctggtctgcaagcctgcattatacaagccttgatcattaaaatgaaatggatgattaaaataaccaattaaatatatatata |
55341661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 55341679 - 55341741
Alignment:
| Q |
392 |
atatatatataggggaattttgaacctacctgagaaataaaaaggaacaaagagagaaagaac |
454 |
Q |
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| T |
55341679 |
atatatatataggggaattttgaacctacctgagatataaaaaggaacaaagagagaaagaac |
55341741 |
T |
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