View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2489_low_2 (Length: 458)
Name: NF2489_low_2
Description: NF2489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2489_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 11103655 - 11103450
Alignment:
| Q |
17 |
aaaaattacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggtacgtaacaaaatattac |
116 |
Q |
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| T |
11103655 |
aaaaaatacatatattaattagatggaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggt--taaaaaaaatattac |
11103558 |
T |
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| Q |
117 |
atttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcg |
216 |
Q |
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| T |
11103557 |
atttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcg |
11103458 |
T |
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| Q |
217 |
tttcacct |
224 |
Q |
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|||||||| |
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| T |
11103457 |
tttcacct |
11103450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 11590066 - 11589893
Alignment:
| Q |
52 |
atatattaaaatcatacaatagcacaaatagg-ataactagattaaggtacgtaacaaaatattacatttctatgttgctctcatttgatgattttttgg |
150 |
Q |
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| T |
11590066 |
atatattaaaatcatacaatagcacaaatagggataactagattaaggt---taaaaaaatattacatttctatgttgctctcatttgatgattttttgg |
11589970 |
T |
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| Q |
151 |
ctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
227 |
Q |
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| T |
11589969 |
ctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
11589893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 312 - 436
Target Start/End: Complemental strand, 11103306 - 11103179
Alignment:
| Q |
312 |
atcagccttgccacggattttaagaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataataaaacccagaaacaatagcaccac- |
410 |
Q |
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| T |
11103306 |
atcagctttgccacggattttaggaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaataatagcaccact |
11103207 |
T |
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| Q |
411 |
--caaccttattatagattgagcctcat |
436 |
Q |
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| T |
11103206 |
aataaccttattatagattgagcctcat |
11103179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 312 - 435
Target Start/End: Complemental strand, 11589753 - 11589627
Alignment:
| Q |
312 |
atcagccttgccacggattttaagaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataataaaacccagaaacaatagcaccac- |
410 |
Q |
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| T |
11589753 |
atcagctttgccacggattttaggaaaccattttagattgaaagtatttgtgggcatcattatccaaatcataatacaacccagaaataatagcaccact |
11589654 |
T |
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| Q |
411 |
--caaccttattatagattgagcctca |
435 |
Q |
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|||||||||||||||||||||||| |
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| T |
11589653 |
aataaccttattatagattgagcctca |
11589627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 11115436 - 11115341
Alignment:
| Q |
107 |
aaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta |
205 |
Q |
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| T |
11115436 |
aaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaagtggctattaacaacactggaaaagtgta |
11115341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 11103425 - 11103338
Alignment:
| Q |
224 |
tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcataatattggactaaaa |
309 |
Q |
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| T |
11103425 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatttgaataaaa |
11103338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 11589871 - 11589784
Alignment:
| Q |
224 |
tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcataatattggactaaaa |
309 |
Q |
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| T |
11589871 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatttgaataaaa |
11589784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 429
Target Start/End: Complemental strand, 11115145 - 11115062
Alignment:
| Q |
349 |
ttgaaagtatttgtaggcatcattatccaaatcataataaaacccagaaacaatagcaccacc---aaccttattatagattga |
429 |
Q |
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|||||||||| ||||||||||||||| |||| | ||| ||||||||||||| || ||||| | ||||||||| |||||||| |
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| T |
11115145 |
ttgaaagtatatgtaggcatcattataaaaatgaaaattaaacccagaaacagtaacaccatcaataaccttattgtagattga |
11115062 |
T |
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