View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2489_low_5 (Length: 352)
Name: NF2489_low_5
Description: NF2489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2489_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 143822 - 143504
Alignment:
| Q |
21 |
tttcatacatgatttaatcaccagcatctgtactatgca------gtactttcactaagaaatatattcatacaaactgtgaatgttaacattacataac |
114 |
Q |
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| T |
143822 |
tttcatacatgatttaatcaccagcatctgtactatgcaaatgcagtactttcactaagaaatatattcatacaaactgtgaatgttaacattacataac |
143723 |
T |
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| Q |
115 |
atatatataattcatgaaaaataataagatatgttttgaaattctaacaaaatcaactagtactaagaactacttcaaacgaaatacaccaataactcta |
214 |
Q |
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| T |
143722 |
atata----attcatgaaaaataataagatatgtttggaaattctaacaaaatcaactagtactaagaactacttcaaacgaaatacaccaataactcta |
143627 |
T |
|
| Q |
215 |
agaaaattgacagcagcaaataagaaaattgcaattccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143626 |
agaaaattgacagcagcaaataagaaaattgcaattccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatat |
143527 |
T |
|
| Q |
315 |
aatgtttccaccggttattataa |
337 |
Q |
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|||||||||||| |||||||||| |
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| T |
143526 |
aatgtttccaccagttattataa |
143504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 106251 - 106324
Alignment:
| Q |
251 |
ccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatataatgtttcca |
324 |
Q |
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| T |
106251 |
ccaacaatagttgagctgaatctccaaggatcacgaaaataaactgatctcagcattcccatataatgcttcca |
106324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 119 - 337
Target Start/End: Original strand, 45957935 - 45958157
Alignment:
| Q |
119 |
atataattcatgaaaaataataagatatgttttgaaattctaacaaaatcaactagtactaa----gaactacttcaaacgaaatacaccaataactcta |
214 |
Q |
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|||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| || ||||||| ||||| | |||||||||||||| |
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| T |
45957935 |
atataattcatgaaaaataatatgatatgtgtggaaattctaacaaaatcaactagtactaaaaattaattacttcagacgaactgcaccaataactcta |
45958034 |
T |
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| Q |
215 |
agaaaattgacagcagcaaataagaaaattgcaattccaacaacagttgaactgattctccaaggatcacgaaaatacactgatctcaacattcccatat |
314 |
Q |
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|||||||||||| |||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||||| |||||||| || ||||||||||||| |
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| T |
45958035 |
agaaaattgacaacagcaaataagaaaatagcaattcccacaacagttgaactaagcctccgaggatcacgaaagtacactgaccttaacattcccatat |
45958134 |
T |
|
| Q |
315 |
aatgtttccaccggttattataa |
337 |
Q |
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|||||||||||| |||||||||| |
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| T |
45958135 |
aatgtttccaccagttattataa |
45958157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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