View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2489_low_6 (Length: 288)
Name: NF2489_low_6
Description: NF2489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2489_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 36746249 - 36746505
Alignment:
| Q |
16 |
gaaagcagaaacaaagaaccagatttgcttaaccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaaggcttgacttgca |
115 |
Q |
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| T |
36746249 |
gaaagcagaaacaaagaaccagatttgcttaaccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaaggcttgacttgca |
36746348 |
T |
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| Q |
116 |
gaggaattcccaatagtgtttctatctaaggatctctttaagctaccctacaagtattgttgctgcaactttcaataaaatacatagatgagactgatct |
215 |
Q |
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| T |
36746349 |
gaggaattcccaatagtgtttctatctaaggatctctttaagctaccctacaagtattgttgctgcaactttcaataaaatacatagatgagactgatct |
36746448 |
T |
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| Q |
216 |
tgtctatgtacaagtatgtttgtttgttaatcaaatgttgtattttggtgttctaga |
272 |
Q |
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| T |
36746449 |
tgtctatgtacatatatgtttgtttgttaatcaaatgttgtattttggtgttctaga |
36746505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 29014396 - 29014439
Alignment:
| Q |
182 |
aactttcaataaaatacatagatgagactgatcttgtctatgta |
225 |
Q |
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| T |
29014396 |
aactttcaataaaatacatagatgagactgatgttgtctatgta |
29014439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 6361781 - 6361701
Alignment:
| Q |
64 |
aagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagtgtttctatctaa |
144 |
Q |
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| T |
6361781 |
aagatgccttacactctgctttatccttctagtgaggaaggattgacttgcagaggcattcccaacagtgtctctatctaa |
6361701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 6287358 - 6287290
Alignment:
| Q |
64 |
aagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagt |
132 |
Q |
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| T |
6287358 |
aagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagt |
6287290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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