View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2491_high_10 (Length: 250)

Name: NF2491_high_10
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2491_high_10
NF2491_high_10
[»] chr6 (7 HSPs)
chr6 (4-140)||(9307060-9307196)
chr6 (1-73)||(35223199-35223271)
chr6 (87-144)||(6624247-6624303)
chr6 (82-139)||(12603936-12603993)
chr6 (82-139)||(25483397-25483454)
chr6 (85-139)||(21382481-21382536)
chr6 (83-136)||(26545867-26545920)
[»] chr1 (16 HSPs)
chr1 (1-121)||(49384414-49384533)
chr1 (7-139)||(17240716-17240850)
chr1 (32-141)||(21749234-21749344)
chr1 (7-138)||(9008761-9008892)
chr1 (34-144)||(17242051-17242163)
chr1 (88-144)||(48030240-48030296)
chr1 (85-138)||(9011059-9011111)
chr1 (83-138)||(42097326-42097382)
chr1 (84-140)||(51676335-51676391)
chr1 (83-141)||(21747940-21747999)
chr1 (87-141)||(43402260-43402314)
chr1 (87-139)||(13971004-13971057)
chr1 (82-138)||(35713692-35713749)
chr1 (106-138)||(24304327-24304359)
chr1 (9-73)||(35712520-35712584)
chr1 (87-135)||(37182076-37182124)
[»] chr4 (20 HSPs)
chr4 (5-141)||(24685021-24685159)
chr4 (1-135)||(24126203-24126337)
chr4 (1-73)||(47376598-47376671)
chr4 (1-73)||(12861478-12861550)
chr4 (1-73)||(6657546-6657618)
chr4 (1-141)||(44355326-44355469)
chr4 (4-73)||(23506301-23506370)
chr4 (84-137)||(56083355-56083408)
chr4 (85-143)||(1995863-1995922)
chr4 (87-144)||(39661319-39661377)
chr4 (84-144)||(5169307-5169368)
chr4 (84-141)||(52704645-52704702)
chr4 (32-126)||(6210618-6210713)
chr4 (84-135)||(47861936-47861987)
chr4 (115-145)||(9001437-9001467)
chr4 (82-138)||(5170382-5170439)
chr4 (87-139)||(6658756-6658808)
chr4 (84-139)||(16314200-16314256)
chr4 (33-73)||(47863628-47863668)
chr4 (33-73)||(51568875-51568915)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-135)||(10791-10925)
[»] chr2 (3 HSPs)
chr2 (1-140)||(25649917-25650060)
chr2 (90-141)||(29042333-29042384)
chr2 (83-126)||(41659502-41659545)
[»] chr7 (16 HSPs)
chr7 (1-144)||(15814428-15814573)
chr7 (1-139)||(23456593-23456734)
chr7 (7-138)||(5769227-5769360)
chr7 (83-138)||(19628180-19628235)
chr7 (86-140)||(23455354-23455407)
chr7 (202-239)||(37049070-37049107)
chr7 (91-139)||(6591268-6591316)
chr7 (207-239)||(27097210-27097242)
chr7 (207-239)||(27181061-27181093)
chr7 (87-146)||(91930-91989)
chr7 (85-139)||(21263319-21263374)
chr7 (83-144)||(12628027-12628089)
chr7 (83-144)||(47578583-47578645)
chr7 (210-239)||(37713035-37713064)
chr7 (85-144)||(21261974-21262034)
chr7 (207-239)||(45855568-45855600)
[»] chr8 (12 HSPs)
chr8 (87-142)||(38973749-38973804)
chr8 (87-142)||(39004847-39004902)
chr8 (32-139)||(14101035-14101144)
chr8 (87-142)||(14099741-14099796)
chr8 (87-140)||(38980160-38980213)
chr8 (87-140)||(39011257-39011310)
chr8 (207-239)||(5808714-5808746)
chr8 (85-139)||(3917795-3917849)
chr8 (35-145)||(9310871-9310985)
chr8 (84-140)||(9755682-9755739)
chr8 (24-73)||(40462337-40462386)
chr8 (87-139)||(42480897-42480949)
[»] chr3 (12 HSPs)
chr3 (83-143)||(37085408-37085469)
chr3 (1-50)||(13865872-13865921)
chr3 (87-137)||(42277232-42277282)
chr3 (95-141)||(52042112-52042158)
chr3 (83-143)||(15439677-15439738)
chr3 (210-239)||(29123588-29123617)
chr3 (83-139)||(37086739-37086796)
chr3 (87-135)||(11494448-11494496)
chr3 (207-239)||(35062046-35062078)
chr3 (84-139)||(36438772-36438828)
chr3 (109-137)||(41538879-41538907)
chr3 (87-135)||(46651699-46651746)
[»] scaffold0061 (2 HSPs)
scaffold0061 (84-141)||(11253-11311)
scaffold0061 (27-72)||(11196-11240)
[»] chr5 (5 HSPs)
chr5 (82-143)||(27490094-27490156)
chr5 (1-69)||(7491882-7491950)
chr5 (88-138)||(19214139-19214189)
chr5 (85-139)||(29875946-29876000)
chr5 (87-136)||(5575296-5575345)
[»] scaffold0484 (1 HSPs)
scaffold0484 (87-142)||(11532-11587)
[»] scaffold0262 (1 HSPs)
scaffold0262 (24-73)||(2825-2874)
[»] scaffold0071 (1 HSPs)
scaffold0071 (83-143)||(22453-22514)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 9307060 - 9307196
Alignment:
Q  4 atttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaagnnnnnnnngataggggggtataccaaaata 103  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||         ||| |||||||||||||||||    
T  9307060 atttgtccagtcacatgccatcaggggtcaaaatcaaagaatattcaaatggcgagggggaatctccaagtttttttttata-gggggtataccaaaata 9307158  T
Q  104 cgcccatatggca-gggggtaaaaacctattaacccta 140  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  9307159 cgcccatatggcaggggggtaaaaacctattaacccta 9307196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35223271 - 35223199
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||| | |||| | ||||||||||||||||    
T  35223271 ctaatttgtccagtcacatgtcatcagggttcaaaactaaagaatctcctaatgacaagggggaatctccaag 35223199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 6624303 - 6624247
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaaaaa 144  Q
    ||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||    
T  6624303 gggggtataccaaaagac-cccaaatggcaaggggtaaaaacctattaaccctaaaaa 6624247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 12603993 - 12603936
Alignment:
Q  82 gataggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccct 139  Q
    |||||||||||| ||||||| || |||| |||||||||||||||| ||||||||||||    
T  12603993 gataggggggtaaaccaaaagactcccaaatggcagggggtaaaagcctattaaccct 12603936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 25483397 - 25483454
Alignment:
Q  82 gataggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccct 139  Q
    ||||||||||||  |||||| || |||| |||||||||||||||| ||||||||||||    
T  25483397 gataggggggtaatccaaaagactcccaaatggcagggggtaaaagcctattaaccct 25483454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 21382536 - 21382481
Alignment:
Q  85 aggggggtataccaaaatacgcccatatggcag-ggggtaaaaacctattaaccct 139  Q
    ||||||||||||||||| || |||||||||||| ||||| ||| ||||||||||||    
T  21382536 aggggggtataccaaaagacccccatatggcaggggggtgaaagcctattaaccct 21382481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 26545867 - 26545920
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaac 136  Q
    ||||||||||| ||||||| || | || |||||||||||||||| |||||||||    
T  26545867 ataggggggtaaaccaaaagaccctcaaatggcagggggtaaaagcctattaac 26545920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 49384414 - 49384533
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaagnnnnnnnngataggggggtataccaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||    
T  49384414 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaagttttttttgata-gggggtataccaaa 49384512  T
Q  101 atacgcccatatggcaggggg 121  Q
    ||||||| |||||||||||||    
T  49384513 atacgcctatatggcaggggg 49384533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 17240850 - 17240716
Alignment:
Q  7 tgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag-nnnnnnnngataggggggtataccaaaatacg 105  Q
    |||||||||| ||  |||||||| ||||||||||||||||||| |||||| ||||||||||| ||||         || ||||||||||||||||| ||     
T  17240850 tgtccagtcatatatcatcagggttcaaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtataccaaaagacc 17240751  T
Q  106 cccatatggca-gggggtaaaaacctattaaccct 139  Q
    |||| |||||| |||||||||| ||||||||||||    
T  17240750 cccaaatggcaggggggtaaaagcctattaaccct 17240716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 21749234 - 21749344
Alignment:
Q  32 caaaaccaaagaatcttcaaatggcgagggggaatctccaagnnnnnnnn-gataggggggtataccaaaatacgcccatatggcagggggtaaaaacct 130  Q
    ||||| |||||||||||| |||||| ||||||||||||||||         | |||||||||| ||||||| |||| ||||||| ||||||||||| |||    
T  21749234 caaaatcaaagaatcttctaatggcaagggggaatctccaagtttttttttgttaggggggtaaaccaaaagacgcacatatggtagggggtaaaagcct 21749333  T
Q  131 attaaccctaa 141  Q
    |||||||||||    
T  21749334 attaaccctaa 21749344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 9008892 - 9008761
Alignment:
Q  7 tgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaagnnnnnnnn-gataggggggtataccaaaatacg 105  Q
    |||||||||| ||  |||||| | ||||||||||||||||||| |||||| ||||||||||| ||||         || |||||| |||||||||| ||     
T  9008892 tgtccagtcatatatcatcagagttcaaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggg-tataccaaaagacc 9008794  T
Q  106 cccatatggcagggggtaaaaacctattaaccc 138  Q
    |||| |||||||||||||||| |||||||||||    
T  9008793 cccaaatggcagggggtaaaagcctattaaccc 9008761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 17242051 - 17242163
Alignment:
Q  34 aaaccaaagaatcttcaaatggcgagggggaatctccaagnnnnnnnn-gataggggggtataccaaaatacgcccatatggcaggggg-taaaaaccta 131  Q
    |||||||||||||||| |||||| ||||||||||| ||||         || |||||||||||||||||  | |||| ||||||||||| ||||| ||||    
T  17242051 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtataccaaaaagcccccaaatggcaggggggtaaaagccta 17242150  T
Q  132 ttaaccctaaaaa 144  Q
    |||||||||||||    
T  17242151 ttaaccctaaaaa 17242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 48030240 - 48030296
Alignment:
Q  88 ggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaaaaa 144  Q
    |||||||| ||||| || |||| |||||||||||||||| |||||||||||||||||    
T  48030240 ggggtatatcaaaagacccccaaatggcagggggtaaaagcctattaaccctaaaaa 48030296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 9011059 - 9011111
Alignment:
Q  85 aggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccc 138  Q
    |||||||||||||||||  | |||| ||||||||||||||||||||||||||||    
T  9011059 aggggggtataccaaaaagc-cccaaatggcagggggtaaaaacctattaaccc 9011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 42097382 - 42097326
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcag-ggggtaaaaacctattaaccc 138  Q
    ||||||||||| ||||||| || |||| ||||||| |||||||||||||||||||||    
T  42097382 ataggggggtaaaccaaaagacccccaaatggcaggggggtaaaaacctattaaccc 42097326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 51676335 - 51676391
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaacccta 140  Q
    |||||||||||||||||| || |||| || |||||||||||||  ||||||||||||    
T  51676335 taggggggtataccaaaagacccccaaatagcagggggtaaaagtctattaacccta 51676391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 21747999 - 21747940
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcag-ggggtaaaaacctattaaccctaa 141  Q
    ||||||||||| ||||||| || |||| ||||||| ||||||||| ||||||||||||||    
T  21747999 ataggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccctaa 21747940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 43402314 - 43402260
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaa 141  Q
    ||||||| ||||||| || |||| |||||||||||||||| |||||||| |||||    
T  43402314 gggggtaaaccaaaagacccccaaatggcagggggtaaaagcctattaatcctaa 43402260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 13971004 - 13971057
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggg-gtaaaaacctattaaccct 139  Q
    ||||||| ||||||| || |||| |||||||||| |||||||||||||||||||    
T  13971004 gggggtaaaccaaaagactcccaaatggcaggggagtaaaaacctattaaccct 13971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 35713692 - 35713749
Alignment:
Q  82 gataggggggtataccaaaatacgcccatatggca-gggggtaaaaacctattaaccc 138  Q
    |||| ||||||||||||||| || ||||||||||| |||||||||| || ||||||||    
T  35713692 gatatgggggtataccaaaagacccccatatggcaggggggtaaaagcccattaaccc 35713749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 24304327 - 24304359
Alignment:
Q  106 cccatatggcagggggtaaaaacctattaaccc 138  Q
    |||| ||||||||||||||||||||||||||||    
T  24304327 cccaaatggcagggggtaaaaacctattaaccc 24304359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 35712584 - 35712520
Alignment:
Q  9 tccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    |||||||| ||| ||||||||||  |||||||||||||||||  |  | ||||||||||||||||    
T  35712584 tccagtcagatgacatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctccaag 35712520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 37182124 - 37182076
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaa 135  Q
    |||||||  |||||| |||||||||| ||||||||||||| ||||||||    
T  37182124 gggggtaagccaaaagacgcccatatagcagggggtaaaagcctattaa 37182076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 24685159 - 24685021
Alignment:
Q  5 tttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag-nnnnnnnngataggggggtataccaaaata 103  Q
    ||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  24685159 tttgtccggtcacatgtcattaggggtcaaaactaaagaatcttcaaatggcgagggggaatctccaagtttttttttgataggggggtataccaaaata 24685060  T
Q  104 cgcccatatggca-gggggtaaaaacctattaaccctaa 141  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  24685059 cgcccatatggcaggggggtaaaagcctattaaccctaa 24685021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 24126337 - 24126203
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag-nnnnnnnngataggggggtataccaa 99  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||         ||||  ||||||||||||    
T  24126337 ctaatttgtccagtcacacgtcatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatttccaagttttttttggata--ggggtataccaa 24126240  T
Q  100 aatacgcccatatggca-gggggtaaaaacctattaa 135  Q
    |||||||||||||| || |||||||||||||||||||    
T  24126239 aatacgcccatatgacaggggggtaaaaacctattaa 24126203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47376671 - 47376598
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggc-gagggggaatctccaag 73  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |||||||||||||||    
T  47376671 ctaatttgtccagtcacatgctatcagggttcaaaaccaaagaatcttctaatggcagggggggaatctccaag 47376598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12861550 - 12861478
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| | |||| | ||||||||||||||||    
T  12861550 ctaatttgtccagtcacatgtcatcagggttcaaaaccaaagaatctcctaatgacaagggggaatctccaag 12861478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6657618 - 6657546
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| | |||| | ||||||||||| ||||    
T  6657618 ctaatttgtccagtcacatgtcatcagggttcaaaaccaaagaatctcctaatgacaagggggaatctacaag 6657546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 44355326 - 44355469
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag---nnnnnnnngataggggggtatacc 97  Q
    |||||||||||| |||||||  ||||||| ||||||||||||||||||| ||| || ||||||||||| ||||            | ||||  |||||||    
T  44355326 ctaatttgtccaatcacatgttatcagggttcaaaaccaaagaatcttctaatagcaagggggaatctacaagttttttttttttacagggatgtatacc 44355425  T
Q  98 aaaatacgcccatatggcagggggtaaaaacctattaaccctaa 141  Q
    |||| ||  ||| |||||||||||||||||||||||||||||||    
T  44355426 aaaagacctccaaatggcagggggtaaaaacctattaaccctaa 44355469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 23506301 - 23506370
Alignment:
Q  4 atttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||  ||||  | ||||||||||||||||    
T  23506301 atttgtccagtcatatgctatcagggttcaaaaccaaagaatctataaattacaagggggaatctccaag 23506370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 56083408 - 56083355
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaacc 137  Q
    |||||||||||||||||| || |||| |||||||||||||||| ||||||||||    
T  56083408 taggggggtataccaaaagacccccaaatggcagggggtaaaagcctattaacc 56083355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 1995922 - 1995863
Alignment:
Q  85 aggggggtataccaaaatacgcccatatggcag-ggggtaaaaacctattaaccctaaaa 143  Q
    ||||||||||||||||| || |||||||||||| ||||| ||| ||||||||||||||||    
T  1995922 aggggggtataccaaaagacccccatatggcaggggggtgaaagcctattaaccctaaaa 1995863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 39661319 - 39661377
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggt-aaaaacctattaaccctaaaaa 144  Q
    ||||||| ||||||| || |||| |||||||||||| ||||||||||||||||||||||    
T  39661319 gggggtaaaccaaaagacccccaaatggcagggggttaaaaacctattaaccctaaaaa 39661377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 5169368 - 5169307
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggcag-ggggtaaaaacctattaaccctaaaaa 144  Q
    |||||||||| ||||||| ||||||| ||||||| ||||||||| ||||||||||| |||||    
T  5169368 taggggggtaaaccaaaagacgcccaaatggcaggggggtaaaagcctattaacccaaaaaa 5169307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 52704702 - 52704645
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaa 141  Q
    |||||||||| ||||||| |||  ||||||||||| ||||||||| ||||||||||||    
T  52704702 taggggggtaaaccaaaagacgttcatatggcaggaggtaaaaacttattaaccctaa 52704645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 6210713 - 6210618
Alignment:
Q  32 caaaaccaaagaatcttcaaatggcgagggggaatctccaag-nnnnnnnngataggggggtataccaaaatacgcccatatggcagggggtaaaa 126  Q
    ||||| |||||||||||| |||||| ||||||||||||||||         | |||||||||| ||||||| |||| ||||||| |||||||||||    
T  6210713 caaaatcaaagaatcttctaatggcaagggggaatctccaagtttttttttgttaggggggtaaaccaaaagacgctcatatggtagggggtaaaa 6210618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 47861987 - 47861936
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaa 135  Q
    |||||||||| ||||||| || |||| |||||||||||||||| ||||||||    
T  47861987 taggggggtaaaccaaaagacccccaaatggcagggggtaaaagcctattaa 47861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 9001467 - 9001437
Alignment:
Q  115 cagggggtaaaaacctattaaccctaaaaag 145  Q
    |||||||||||||||||||||||||||||||    
T  9001467 cagggggtaaaaacctattaaccctaaaaag 9001437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 5170382 - 5170439
Alignment:
Q  82 gataggggggtataccaaaatacgcccatatggca-gggggtaaaaacctattaaccc 138  Q
    |||||||||||||||||||| || || | |||||| |||||||||| |||||||||||    
T  5170382 gataggggggtataccaaaaaactccaaaatggcaggggggtaaaagcctattaaccc 5170439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 6658756 - 6658808
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccct 139  Q
    ||||||| |||||||||| | || ||||||||||||||| | |||||||||||    
T  6658756 gggggtaaaccaaaataccctcaaatggcagggggtaaacatctattaaccct 6658808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 16314200 - 16314256
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggca-gggggtaaaaacctattaaccct 139  Q
    |||||||||| ||||||| || |||| |||||| |||||||||| ||||||||||||    
T  16314200 taggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccct 16314256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 47863628 - 47863668
Alignment:
Q  33 aaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  47863628 aaaatcaaagaatcttctaatgacgagggggaatctccaag 47863668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 51568915 - 51568875
Alignment:
Q  33 aaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  51568915 aaaaccaaagaatcttctaatgtcgaggggggatctccaag 51568875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 10925 - 10791
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag-nnnnnnnngataggggggtataccaa 99  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||         ||||  ||||||||||||    
T  10925 ctaatttgtccagtcacacgtcatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatttccaagttttttttggata--ggggtataccaa 10828  T
Q  100 aatacgcccatatggca-gggggtaaaaacctattaa 135  Q
    |||||||||||||| || |||||||||||||||||||    
T  10827 aatacgcccatatgacaggggggtaaaaacctattaa 10791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25649917 - 25650060
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag---nnnnnnnngataggggggtatacc 97  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||            |||||||| ||||||    
T  25649917 ctaatttgtccagtcacataccatcaggggtcaaaaccaaagaatcttcaaacggcgaggtggaatctccaagttttttttttttatagggggctatacc 25650016  T
Q  98 aaaatacgcccatatggca-gggggtaaaaacctattaacccta 140  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||    
T  25650017 aaaatacgcccatattgcaggggggtaaaagcctattaacccta 25650060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 29042384 - 29042333
Alignment:
Q  90 ggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaa 141  Q
    |||||||||||| || |||| || ||||||||||||| ||||||||||||||    
T  29042384 ggtataccaaaagacccccaaatagcagggggtaaaagcctattaaccctaa 29042333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 41659545 - 41659502
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcagggggtaaaa 126  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||    
T  41659545 ataggggggtataccaaaagacgtccatatggcaaggggtaaaa 41659502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 15814573 - 15814428
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag---nnnnnnnngataggggggtatacc 97  Q
    |||||||||  |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||            ||| |||||||||||    
T  15814573 ctaatttgtttagtcacatgccagcaggggtcaaaaccacagaatctacaaatggcgagggggaatctacaagttttttttttttata-gggggtatacc 15814475  T
Q  98 aaaatacgcccatatggcagggggtaaaaacctattaaccctaaaaa 144  Q
    |||| |||||||||||||||||||||||||||  |||||||||||||    
T  15814474 aaaagacgcccatatggcagggggtaaaaaccatttaaccctaaaaa 15814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 23456593 - 23456734
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag---nnnnnnnngataggggggtatacc 97  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||||| | ||||||||||||||||           || | |||||||||||    
T  23456593 ctaatttgtccagtcacatgtcatcagggttcaaaaccaaagaatctttaaatgacaagggggaatctccaagtttttttttttgaca-gggggtatacc 23456691  T
Q  98 aaaatacgcccatatggcagggg-gtaaaaacctattaaccct 139  Q
    |||| |||| ||||||||||||| |||||||||||||||||||    
T  23456692 aaaagacgctcatatggcaggggagtaaaaacctattaaccct 23456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 5769227 - 5769360
Alignment:
Q  7 tgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag-nnnnnnnngataggggggtataccaaaatacg 105  Q
    |||||||||| ||  |||||||| ||||||||||||||||||| |||||| ||||||||||| ||||         || ||||||||||||||||| ||     
T  5769227 tgtccagtcatatatcatcagggttcaaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtataccaaaagacc 5769326  T
Q  106 cccatatggca-gggggtaaaaacctattaaccc 138  Q
    |||| |||||| |||||||||| |||||||||||    
T  5769327 cccaaatggcaggggggtaaaagcctattaaccc 5769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 19628180 - 19628235
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccc 138  Q
    ||||||||||| ||||||| || |||| ||||||||||||||||||||||||||||    
T  19628180 ataggggggtaaaccaaaagactcccaaatggcagggggtaaaaacctattaaccc 19628235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 23455407 - 23455354
Alignment:
Q  86 ggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaacccta 140  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  23455407 ggggggtataccaaaatacgctcatatggca-ggggtaaaagcctattaacccta 23455354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 37049107 - 37049070
Alignment:
Q  202 aaggaaggttatttgtaagaacttattatccatttcat 239  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  37049107 aaggaaggttatttgcaagaacttattatccatttcat 37049070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 6591316 - 6591268
Alignment:
Q  91 gtataccaaaatacgcccatatggcagggggtaaaaacctattaaccct 139  Q
    ||||||||||||||  ||| |||||||||||||||| ||||||||||||    
T  6591316 gtataccaaaataccaccaaatggcagggggtaaaagcctattaaccct 6591268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 27097242 - 27097210
Alignment:
Q  207 aggttatttgtaagaacttattatccatttcat 239  Q
    |||||||||||||||||||||||||||||||||    
T  27097242 aggttatttgtaagaacttattatccatttcat 27097210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 27181061 - 27181093
Alignment:
Q  207 aggttatttgtaagaacttattatccatttcat 239  Q
    |||||||||||||||||||||||||||||||||    
T  27181061 aggttatttgtaagaacttattatccatttcat 27181093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 91989 - 91930
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaaaaaga 146  Q
    ||||||| ||||||| ||||||||||| |||||||||||| ||  ||||||||| |||||    
T  91989 gggggtaaaccaaaagacgcccatatgacagggggtaaaagccagttaaccctagaaaga 91930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 21263319 - 21263374
Alignment:
Q  85 aggggggtataccaaaatacgcccatatggca-gggggtaaaaacctattaaccct 139  Q
    ||||||||||||||||| || ||||||||||| |||||| ||| ||||||||||||    
T  21263319 aggggggtataccaaaagacccccatatggcaggggggtgaaagcctattaaccct 21263374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 12628089 - 12628027
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcaggggg-taaaaacctattaaccctaaaaa 144  Q
    ||||||||||| ||||||| || | || ||||||||||| ||||| |||||||||||||||||    
T  12628089 ataggggggtaaaccaaaagacccgcaaatggcaggggggtaaaagcctattaaccctaaaaa 12628027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 47578583 - 47578645
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggca-gggggtaaaaacctattaaccctaaaaa 144  Q
    |||||||||||||||||||  | |||| |||||| |||||||||| ||||||||||| |||||    
T  47578583 ataggggggtataccaaaagtctcccaaatggcaggggggtaaaagcctattaacccaaaaaa 47578645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 37713064 - 37713035
Alignment:
Q  210 ttatttgtaagaacttattatccatttcat 239  Q
    ||||||||||||||||||||||||||||||    
T  37713064 ttatttgtaagaacttattatccatttcat 37713035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 21262034 - 21261974
Alignment:
Q  85 aggggggtataccaaaatacgcccatatggcag-ggggtaaaaacctattaaccctaaaaa 144  Q
    ||||||||||||||||| || || | ||||||| ||||||||| |||||||||||| ||||    
T  21262034 aggggggtataccaaaagacccctaaatggcaggggggtaaaagcctattaacccttaaaa 21261974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 45855600 - 45855568
Alignment:
Q  207 aggttatttgtaagaacttattatccatttcat 239  Q
    ||||||||||||||||||||||||| |||||||    
T  45855600 aggttatttgtaagaacttattatctatttcat 45855568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 38973804 - 38973749
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaaa 142  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  38973804 gggggtataccaaaaaacccccaaatggcagggggtaaaaacctattaaccctaaa 38973749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 39004902 - 39004847
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaaa 142  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  39004902 gggggtataccaaaaaacccccaaatggcagggggtaaaaacctattaaccctaaa 39004847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 14101035 - 14101144
Alignment:
Q  32 caaaaccaaagaatcttcaaatggcgagggggaatctccaagnnnnnnnn-gataggggggtataccaaaatacgcccatatggca-gggggtaaaaacc 129  Q
    ||||| |||||||||||| |||||| ||||||||||||||||         | |||||||||| ||||||| |||| ||||||||| |||||||||| ||    
T  14101035 caaaatcaaagaatcttctaatggcaagggggaatctccaagtttttttttgttaggggggtaaaccaaaagacgctcatatggcaggggggtaaaagcc 14101134  T
Q  130 tattaaccct 139  Q
    ||||||||||    
T  14101135 tattaaccct 14101144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 14099796 - 14099741
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaaa 142  Q
    ||||||| ||||||| || |||| |||||||||||||||| |||||||||||||||    
T  14099796 gggggtaaaccaaaagacccccaaatggcagggggtaaaagcctattaaccctaaa 14099741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 38980160 - 38980213
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaacccta 140  Q
    ||||||| ||||||| || |||| ||| ||||||||||||||||||||||||||    
T  38980160 gggggtaaaccaaaagactcccaaatgacagggggtaaaaacctattaacccta 38980213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 39011257 - 39011310
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaacccta 140  Q
    ||||||| ||||||| || |||| ||| ||||||||||||||||||||||||||    
T  39011257 gggggtaaaccaaaagactcccaaatgacagggggtaaaaacctattaacccta 39011310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 5808714 - 5808746
Alignment:
Q  207 aggttatttgtaagaacttattatccatttcat 239  Q
    |||||||||||||||||||||||||||||||||    
T  5808714 aggttatttgtaagaacttattatccatttcat 5808746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 3917849 - 3917795
Alignment:
Q  85 aggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccct 139  Q
    ||||||||| ||||||   |||||| |||||||||||||||| ||||||||||||    
T  3917849 aggggggtaaaccaaatgtcgcccaaatggcagggggtaaaagcctattaaccct 3917795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 9310871 - 9310985
Alignment:
Q  35 aaccaaagaatcttcaaatggcgagggggaatctccaagnnnnnnnngataggggggtataccaaaatacgcccatat----ggcagggggtaaaaacct 130  Q
    ||||| |||||||||  ||||| ||||||||||||||||          |||||||||| ||||||| ||||||||||    || ||||||||||| |||    
T  9310871 aaccagagaatcttctcatggcaagggggaatctccaagttttttttcctaggggggtaaaccaaaagacgcccatatatatggaagggggtaaaagcct 9310970  T
Q  131 attaaccctaaaaag 145  Q
    |||||||| ||||||    
T  9310971 attaacccaaaaaag 9310985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 9755739 - 9755682
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggcag-ggggtaaaaacctattaacccta 140  Q
    |||||||||||||||||| || |||| ||||||| |||||||||  ||||||||||||    
T  9755739 taggggggtataccaaaagacccccaaatggcaggggggtaaaagtctattaacccta 9755682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 40462386 - 40462337
Alignment:
Q  24 tcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    |||||| | |||| |||||||||||| |||||| ||||||||||||||||    
T  40462386 tcagggttgaaaatcaaagaatcttctaatggcaagggggaatctccaag 40462337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 42480949 - 42480897
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccct 139  Q
    ||||||| ||||||| || || | |||||||||||||||| ||||||||||||    
T  42480949 gggggtaaaccaaaaaacccctaaatggcagggggtaaaagcctattaaccct 42480897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 37085469 - 37085408
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcaggggg-taaaaacctattaaccctaaaa 143  Q
    ||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  37085469 ataggggggtaaaccaaaagacgcccaaatggcagggggataaaaacctattaaccctaaaa 37085408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13865872 - 13865921
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttca 50  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  13865872 ctaatttgtccagtcacatgctatcagggttgaaaaccaaagaatcttca 13865921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 42277282 - 42277232
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaacc 137  Q
    ||||||||||||||| |  |||| |||||||||||||||| ||||||||||    
T  42277282 gggggtataccaaaaaaaacccaaatggcagggggtaaaagcctattaacc 42277232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 52042158 - 52042112
Alignment:
Q  95 accaaaatacgcccatatggcagggggtaaaaacctattaaccctaa 141  Q
    ||||||| || |||||||| |||||||||||| ||||||||||||||    
T  52042158 accaaaagacacccatatgacagggggtaaaagcctattaaccctaa 52042112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 15439677 - 15439738
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcaggggg-taaaaacctattaaccctaaaa 143  Q
    ||||||||||| ||||||| || |||| ||||| ||||| ||||| ||||||||||||||||    
T  15439677 ataggggggtaaaccaaaagacccccaaatggcgggggggtaaaagcctattaaccctaaaa 15439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 29123617 - 29123588
Alignment:
Q  210 ttatttgtaagaacttattatccatttcat 239  Q
    ||||||||||||||||||||||||||||||    
T  29123617 ttatttgtaagaacttattatccatttcat 29123588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 37086739 - 37086796
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggca-gggggtaaaaacctattaaccct 139  Q
    ||||||||||| ||||||| |||| || |||||| |||||||||| ||||||||||||    
T  37086739 ataggggggtaaaccaaaagacgctcaaatggcaggggggtaaaagcctattaaccct 37086796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 11494448 - 11494496
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaa 135  Q
    ||||||| |||||| | |||| |||||||||||||||||| ||||||||    
T  11494448 gggggtaaaccaaatttcgcctatatggcagggggtaaaagcctattaa 11494496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 35062078 - 35062046
Alignment:
Q  207 aggttatttgtaagaacttattatccatttcat 239  Q
    ||||||||||||||||||||||||| |||||||    
T  35062078 aggttatttgtaagaacttattatctatttcat 35062046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 36438772 - 36438828
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggca-gggggtaaaaacctattaaccct 139  Q
    |||||||||| ||||||| || |||| |||||| |||||||||| ||||||||||||    
T  36438772 taggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccct 36438828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 41538907 - 41538879
Alignment:
Q  109 atatggcagggggtaaaaacctattaacc 137  Q
    |||||||||||||||||||||||||||||    
T  41538907 atatggcagggggtaaaaacctattaacc 41538879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 46651746 - 46651699
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaa 135  Q
    ||||||||||||||| || ||||||||||||||||||||| || |||||    
T  46651746 gggggtataccaaaagac-cccatatggcagggggtaaaagcccattaa 46651699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 11253 - 11311
Alignment:
Q  84 taggggggtataccaaaatacgcccatatggcagggg-gtaaaaacctattaaccctaa 141  Q
    ||||||| || ||||||| || ||||||||||||||| |||||||||||||||||||||    
T  11253 tagggggataaaccaaaagacccccatatggcaggggggtaaaaacctattaaccctaa 11311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 11196 - 11240
Alignment:
Q  27 ggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaa 72  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  11196 ggggttaaaaccaaagaatcttctaatggcgaggggg-atctccaa 11240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 27490156 - 27490094
Alignment:
Q  82 gataggggggtataccaaaatacgcccatatggcaggg-ggtaaaaacctattaaccctaaaa 143  Q
    |||| ||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||||||    
T  27490156 gataagggggtataccaaaagacccccatatgacagggaggtaaaagcctattaaccctaaaa 27490094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7491950 - 7491882
Alignment:
Q  1 ctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctc 69  Q
    ||||||||| ||||||||||||| ||| | |||||| |||||||| ||  |||||| ||||||||||||    
T  7491950 ctaatttgtacagtcacatgccaccagagttcaaaatcaaagaattttgtaatggcaagggggaatctc 7491882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 19214189 - 19214139
Alignment:
Q  88 ggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccc 138  Q
    |||||| |||||| | |||| |||||| |||||||||||||||||||||||    
T  19214189 ggggtaaaccaaatttcgcctatatggtagggggtaaaaacctattaaccc 19214139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 29876000 - 29875946
Alignment:
Q  85 aggggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccct 139  Q
    ||||||||| ||||||   |||||| |||||||||||||||| ||||||||||||    
T  29876000 aggggggtaaaccaaatgtcgcccaaatggcagggggtaaaagcctattaaccct 29875946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 5575345 - 5575296
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaac 136  Q
    ||||||||||||||| ||  ||||||| |||||||||||||| |||||||    
T  5575345 gggggtataccaaaaaaccaccatatgacagggggtaaaaacttattaac 5575296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 11587 - 11532
Alignment:
Q  87 gggggtataccaaaatacgcccatatggcagggggtaaaaacctattaaccctaaa 142  Q
    |||||||  |||||| || |||| |||||||||||||||| |||||||||||||||    
T  11587 gggggtaatccaaaagactcccaaatggcagggggtaaaagcctattaaccctaaa 11532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 2874 - 2825
Alignment:
Q  24 tcaggggtcaaaaccaaagaatcttcaaatggcgagggggaatctccaag 73  Q
    |||||| | |||| |||||||||||| |||||| ||||||||||||||||    
T  2874 tcagggttgaaaatcaaagaatcttctaatggcaagggggaatctccaag 2825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 22514 - 22453
Alignment:
Q  83 ataggggggtataccaaaatacgcccatatggcaggggg-taaaaacctattaaccctaaaa 143  Q
    ||||||||||| ||||||| || |||| ||||| ||||| ||||| ||||||||||||||||    
T  22514 ataggggggtaaaccaaaagacccccaaatggcgggggggtaaaagcctattaaccctaaaa 22453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University