View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2491_high_2 (Length: 609)

Name: NF2491_high_2
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2491_high_2
NF2491_high_2
[»] chr6 (2 HSPs)
chr6 (53-383)||(34704154-34704497)
chr6 (505-570)||(34704301-34704366)
[»] chr2 (2 HSPs)
chr2 (386-569)||(16965399-16965582)
chr2 (173-237)||(16965399-16965463)
[»] chr4 (2 HSPs)
chr4 (198-306)||(16036351-16036460)
chr4 (530-570)||(16036420-16036460)
[»] chr1 (2 HSPs)
chr1 (173-257)||(38506185-38506269)
chr1 (501-569)||(38506205-38506273)
[»] chr3 (2 HSPs)
chr3 (386-440)||(12826049-12826103)
chr3 (173-237)||(12821381-12821445)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 53 - 383
Target Start/End: Complemental strand, 34704497 - 34704154
Alignment:
Q  53 cagtcaagcaatggaatgagagcatggtttctaggttgcgtctagacattgaaaaatcgaaata--------------tgaaggaggcagaaggattttt 138  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||              |||| ||||||| |||||||||    
T  34704497 cagtcaagcaatggaatgagagcatgatttctaggttgcgtccagacattggaatatcgaaatagaaaggagggaatttgaatgaggcaggaggattttt 34704398  T
Q  139 gaatgagaatagacatggtgtgtattgttagttatatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtgga 238  Q
    ||||||||||| ||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  34704397 gaatgagaataaacatggtgtgtat-gttagttatatatag--ttcataactgaaggaataagagatgtgttggaaacagaaacaacatggagaagtgga 34704301  T
Q  239 tagctgatttattgtgcat-gggtatggcaaaggtcgaattaaatagcacacatatgaatacatgcatctcacgttt-tatattagaaggccgaaaatca 336  Q
    |||| ||||||   || || ||||||||||||||| || |||||||||||||| | ||||||||||||||||||||| |   || ||||||||||| |||    
T  34704300 tagccgatttacaatgtatggggtatggcaaaggttgagttaaatagcacacaaaagaatacatgcatctcacgtttattgtttggaaggccgaaattca 34704201  T
Q  337 ggaagtcacaacaataagcaatttaaatttcaactgggtggagggaa 383  Q
    |||||||| |||||||||| | || ||||||||||  ||||||||||    
T  34704200 ggaagtcaaaacaataagctacttgaatttcaactaagtggagggaa 34704154  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 34704366 - 34704301
Alignment:
Q  505 tatatatagttgataactgcatgtataagggatgtgttggaaagagaaagaacatggagaagtgga 570  Q
    ||||||||||| ||||||| | | ||||| ||||||||||||| ||||| ||||||||||||||||    
T  34704366 tatatatagttcataactgaaggaataagagatgtgttggaaacagaaacaacatggagaagtgga 34704301  T

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Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 386 - 569
Target Start/End: Complemental strand, 16965582 - 16965399
Alignment:
Q  386 ataccagtcaagcagtggaatgccatcaagagttcaacagtgtgtccagccattggaaaatcaaaatgggaaaggaaagaggagttttggacgtggaatt 485  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | |||     
T  16965582 ataccagtcaagcagtggaatgtcatcaagagttcaacagtgtgtccagccattggaaaattgaaatgggaaaggaaagaggagttttggacgagtaata 16965483  T
Q  486 gcatttatgtactctagtgtatatatagttgataactgcatgtataagggatgtgttggaaagagaaagaacatggagaagtgg 569  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  16965482 gcatttctgtactctagtgtatatatagttcataactgaatgtataagggatgtgttggaaacagaaacaacatggagaagtgg 16965399  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 16965463 - 16965399
Alignment:
Q  173 tatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtgg 237  Q
    |||||||| |||||||||||| | ||||| ||||||||||||||||||| | |||||||||||||    
T  16965463 tatatatagttcataactgaatgtataagggatgtgttggaaacagaaacaacatggagaagtgg 16965399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 16036460 - 16036351
Alignment:
Q  198 taagagatgtgttggaaacagaaaaagcatggagaagtggatagctgatttattgtgcat-gggtatggcaaaggtcgaattaaatagcacacatatgaa 296  Q
    |||| ||||||||||||| ||||| |  |||||||||||||||||| ||||||| ||||| ||||||||||||||||  |||||||||||  || ||||     
T  16036460 taagggatgtgttggaaatagaaacaatatggagaagtggatagctaatttattttgcatggggtatggcaaaggtctgattaaatagcagccaaatgag 16036361  T
Q  297 tacatgcatc 306  Q
    ||||||||||    
T  16036360 tacatgcatc 16036351  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 570
Target Start/End: Complemental strand, 16036460 - 16036420
Alignment:
Q  530 taagggatgtgttggaaagagaaagaacatggagaagtgga 570  Q
    |||||||||||||||||| ||||| || |||||||||||||    
T  16036460 taagggatgtgttggaaatagaaacaatatggagaagtgga 16036420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 38506269 - 38506185
Alignment:
Q  173 tatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtggatagctgatttattgtgcat 257  Q
    |||||||| ||||||| |||||| ||||| ||||| ||||||||||||| |  |||||||||||| ||||| ||| ||| |||||    
T  38506269 tatatatagttcataattgaaggtataagggatgtattggaaacagaaacaatatggagaagtgggtagcttattaattctgcat 38506185  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 38506273 - 38506205
Alignment:
Q  501 agtgtatatatagttgataactgcatgtataagggatgtgttggaaagagaaagaacatggagaagtgg 569  Q
    ||||||||||||||| |||| || | ||||||||||||| ||||||| ||||| || ||||||||||||    
T  38506273 agtgtatatatagttcataattgaaggtataagggatgtattggaaacagaaacaatatggagaagtgg 38506205  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 12826049 - 12826103
Alignment:
Q  386 ataccagtcaagcagtggaatgccatcaagagttcaacagtgtgtccagccattg 440  Q
    ||||||||||||   |||| ||||||||||||||||||  |||||||||||||||    
T  12826049 ataccagtcaagttttggattgccatcaagagttcaacgctgtgtccagccattg 12826103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 12821381 - 12821445
Alignment:
Q  173 tatatataattcataactgaaggaataagagatgtgttggaaacagaaaaagcatggagaagtgg 237  Q
    |||||||||| ||||| |||||| ||||  ||||||||||||||| ||| |  ||||||||||||    
T  12821381 tatatataatgcataattgaaggcataaaggatgtgttggaaacaaaaataatatggagaagtgg 12821445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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