View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2491_high_5 (Length: 376)
Name: NF2491_high_5
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2491_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 24056664 - 24056785
Alignment:
| Q |
9 |
agcataggcacaatactgatgctgttatatatctcctgctaaaaccactcacaacagaaaacacttcctaaagaaaagcgcagacagcagcaaatgtaaa |
108 |
Q |
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| T |
24056664 |
agcagaggcacaatactgatgctgttatatatctcctgctaaaaccactcacaacagaaaacacttcctaaagaaaagcgcagacagcagcaaatgtaaa |
24056763 |
T |
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| Q |
109 |
cttggcataccccagcctcagc |
130 |
Q |
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| T |
24056764 |
ctcggcataccccagcctcagc |
24056785 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 3213996 - 3213960
Alignment:
| Q |
321 |
caaattgtccaaatcgccgcatgccaaataagccggt |
357 |
Q |
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| T |
3213996 |
caaattgtccaaatcgacgcatgtcaaataagccggt |
3213960 |
T |
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