View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2491_high_6 (Length: 339)
Name: NF2491_high_6
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2491_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 36606639 - 36606318
Alignment:
| Q |
9 |
agcataggataactcaaaccgaattaattgaattgcttcactgttctttttagtgaaggta------ttgcttcattgttaatcgttaaggattgacaac |
102 |
Q |
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| T |
36606639 |
agcataagataactcaaattgaattaattgaattgcttcactgttctttttagtgaaggtagagaacttgcttcattgttaatcgttaaggatttacaac |
36606540 |
T |
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| Q |
103 |
aatatagggaaagaacatggatatcaaaacataggttaaggtcacatgataaatcattatcaatgagtatgactggtcaggtcatctcaaatcactacat |
202 |
Q |
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| T |
36606539 |
tatatatggaaagaacatggatatcaaaacataagttaaggtcacatgataaatcattattaatgagtatgactggtcaggtcatctcaaatcactacat |
36606440 |
T |
|
| Q |
203 |
gtggctagcattctccatgctcgtgttatatacctacttttgcttcatggccaaaatgatctctacaatacataccttcacattataagtgttttatatc |
302 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36606439 |
gtggttagcattctccatgctcctgttatatacctacttttgcttcatggccaaaatgatctatacaatacataccttcacattataagtgttttatatc |
36606340 |
T |
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| Q |
303 |
aagcatggataatgtcatttgt |
324 |
Q |
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||||||||| |||||||||||| |
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| T |
36606339 |
aagcatggagaatgtcatttgt |
36606318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 27539604 - 27539738
Alignment:
| Q |
194 |
tcactacatgtggctagcattctccatgctcgtgttatatacctacttttgcttcatggccaaaatgatctctacaatacataccttcacattataagtg |
293 |
Q |
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||||||||||||| |||||||| | |||||| || |||| ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
27539604 |
tcactacatgtggttagcattcactatgctcttgctata--cctacttttgcttcacaaccaatatgatctctacgatacataccttcacatcataagtg |
27539701 |
T |
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| Q |
294 |
tt------ttatatcaagcatggataatgtcatttgt |
324 |
Q |
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| T |
27539702 |
ttttataattatatcaagcatagataatgtcatttgt |
27539738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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