View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2491_low_1 (Length: 611)

Name: NF2491_low_1
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2491_low_1
NF2491_low_1
[»] chr6 (16 HSPs)
chr6 (17-596)||(12293527-12294107)
chr6 (77-183)||(35182533-35182639)
chr6 (303-410)||(29365427-29365534)
chr6 (71-192)||(12326829-12326950)
chr6 (340-465)||(35102590-35102712)
chr6 (341-465)||(18791440-18791561)
chr6 (309-410)||(34192146-34192247)
chr6 (328-399)||(11661006-11661077)
chr6 (340-465)||(24603444-24603566)
chr6 (340-465)||(25819767-25819889)
chr6 (332-465)||(26710398-26710528)
chr6 (340-453)||(31210889-31210999)
chr6 (332-455)||(9241746-9241865)
chr6 (418-468)||(3118759-3118809)
chr6 (341-454)||(32451820-32451930)
chr6 (327-399)||(20863814-20863885)
[»] chr8 (14 HSPs)
chr8 (303-390)||(2053333-2053421)
chr8 (333-468)||(4807692-4807824)
chr8 (303-399)||(16233604-16233700)
chr8 (340-465)||(38630138-38630260)
chr8 (340-465)||(5192370-5192492)
chr8 (340-465)||(17648326-17648448)
chr8 (340-465)||(19391486-19391608)
chr8 (340-465)||(19924348-19924470)
chr8 (340-460)||(22452272-22452389)
chr8 (341-465)||(4518967-4519088)
chr8 (340-399)||(41688209-41688267)
chr8 (340-397)||(15869437-15869493)
chr8 (303-372)||(16236514-16236583)
chr8 (252-285)||(24359827-24359860)
[»] chr2 (18 HSPs)
chr2 (310-454)||(2123468-2123611)
chr2 (310-403)||(13645868-13645962)
chr2 (340-465)||(18537927-18538049)
chr2 (340-465)||(11175990-11176112)
chr2 (340-460)||(38716281-38716398)
chr2 (341-460)||(26829189-26829305)
chr2 (340-465)||(2986769-2986891)
chr2 (340-465)||(9787642-9787764)
chr2 (340-465)||(9051127-9051248)
chr2 (340-455)||(30714373-30714485)
chr2 (341-455)||(15735157-15735268)
chr2 (418-473)||(32678035-32678090)
chr2 (340-465)||(6763816-6763938)
chr2 (341-450)||(17368314-17368420)
chr2 (322-392)||(21206453-21206523)
chr2 (341-399)||(21773431-21773488)
chr2 (306-335)||(33199671-33199700)
chr2 (307-404)||(36199587-36199683)
[»] chr3 (18 HSPs)
chr3 (303-390)||(34296408-34296495)
chr3 (303-386)||(1718326-1718409)
chr3 (340-465)||(26628124-26628246)
chr3 (340-460)||(4522042-4522159)
chr3 (304-401)||(36033732-36033828)
chr3 (340-465)||(13080977-13081099)
chr3 (341-465)||(27852852-27852972)
chr3 (340-465)||(48907391-48907513)
chr3 (340-460)||(3328912-3329029)
chr3 (340-460)||(3780967-3781083)
chr3 (340-465)||(8542693-8542815)
chr3 (340-460)||(28154981-28155098)
chr3 (344-469)||(28173832-28173954)
chr3 (328-392)||(43668582-43668645)
chr3 (418-473)||(34296554-34296609)
chr3 (303-382)||(54454023-54454102)
chr3 (343-465)||(25022765-25022884)
chr3 (303-399)||(21071535-21071631)
[»] chr7 (28 HSPs)
chr7 (244-460)||(47113202-47113419)
chr7 (303-404)||(43516942-43517043)
chr7 (303-391)||(5776907-5776995)
chr7 (309-399)||(22589346-22589436)
chr7 (341-465)||(35337622-35337743)
chr7 (340-465)||(3562532-3562654)
chr7 (340-465)||(20636702-20636824)
chr7 (340-465)||(27869294-27869416)
chr7 (408-473)||(39296576-39296641)
chr7 (317-392)||(39296681-39296756)
chr7 (340-465)||(13577885-13578006)
chr7 (340-465)||(21224451-21224573)
chr7 (359-460)||(4571461-4571560)
chr7 (340-456)||(19919702-19919815)
chr7 (435-484)||(29747058-29747107)
chr7 (341-465)||(36746603-36746724)
chr7 (418-469)||(18754440-18754491)
chr7 (340-453)||(14624698-14624807)
chr7 (324-460)||(23461104-23461238)
chr7 (354-460)||(26126342-26126445)
chr7 (340-465)||(42271415-42271537)
chr7 (341-453)||(17305859-17305969)
chr7 (318-399)||(20228230-20228306)
chr7 (377-465)||(20638574-20638660)
chr7 (340-460)||(39182023-39182139)
chr7 (340-460)||(41452348-41452465)
chr7 (425-465)||(22589250-22589290)
chr7 (418-454)||(47113176-47113212)
[»] chr4 (20 HSPs)
chr4 (303-404)||(14857473-14857574)
chr4 (303-404)||(43336001-43336102)
chr4 (340-465)||(15058917-15059039)
chr4 (340-455)||(13826518-13826630)
chr4 (340-465)||(13397774-13397896)
chr4 (303-399)||(12101188-12101283)
chr4 (340-460)||(16291779-16291898)
chr4 (342-455)||(4098749-4098860)
chr4 (308-368)||(1521594-1521654)
chr4 (244-280)||(16964828-16964864)
chr4 (303-399)||(22057320-22057416)
chr4 (331-465)||(5304437-5304568)
chr4 (309-367)||(10758690-10758748)
chr4 (318-392)||(13764394-13764467)
chr4 (303-351)||(53097414-53097462)
chr4 (418-473)||(16291888-16291943)
chr4 (341-460)||(51291269-51291386)
chr4 (340-465)||(4357335-4357457)
chr4 (418-483)||(12101333-12101398)
chr4 (343-460)||(19232445-19232560)
[»] chr1 (15 HSPs)
chr1 (303-453)||(28552377-28552527)
chr1 (340-465)||(24962036-24962158)
chr1 (303-399)||(6285237-6285333)
chr1 (303-453)||(1937219-1937370)
chr1 (340-465)||(19078024-19078146)
chr1 (340-465)||(19125914-19126036)
chr1 (340-460)||(16551742-16551860)
chr1 (340-454)||(24196355-24196466)
chr1 (343-465)||(24749881-24750000)
chr1 (340-465)||(3616882-3617004)
chr1 (340-465)||(48471962-48472084)
chr1 (333-454)||(2260470-2260589)
chr1 (346-460)||(9387780-9387893)
chr1 (340-399)||(28920755-28920814)
chr1 (318-399)||(27495081-27495162)
[»] scaffold0025 (2 HSPs)
scaffold0025 (340-465)||(19366-19487)
scaffold0025 (341-465)||(61897-62020)
[»] chr5 (10 HSPs)
chr5 (340-465)||(245677-245799)
chr5 (340-465)||(18695086-18695208)
chr5 (303-404)||(24025194-24025293)
chr5 (340-465)||(38476569-38476691)
chr5 (340-465)||(16901096-16901218)
chr5 (343-460)||(17825599-17825713)
chr5 (340-460)||(40428738-40428855)
chr5 (309-409)||(36954440-36954538)
chr5 (418-473)||(24025094-24025149)
chr5 (343-460)||(41663625-41663740)
[»] scaffold0406 (1 HSPs)
scaffold0406 (340-455)||(2084-2196)
[»] scaffold0607 (1 HSPs)
scaffold0607 (340-465)||(2148-2270)
[»] scaffold0267 (1 HSPs)
scaffold0267 (340-460)||(3667-3784)
[»] scaffold0087 (1 HSPs)
scaffold0087 (340-465)||(25063-25185)
[»] scaffold0001 (1 HSPs)
scaffold0001 (343-465)||(142049-142168)
[»] scaffold0419 (1 HSPs)
scaffold0419 (341-465)||(3060-3181)
[»] scaffold0002 (1 HSPs)
scaffold0002 (241-280)||(15712-15751)
[»] scaffold1202 (1 HSPs)
scaffold1202 (377-465)||(1909-1995)


Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 596
Target Start/End: Complemental strand, 12294107 - 12293527
Alignment:
Q  17 atatataaggaaattaatatataggtctatagatctttgatcatgacaactcaaaaacaccacatgcaggctgcactcttgttatcacaaatgccaagtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12294107 atatataaggaaattaatatataggtctatagatctttgatcatgacaactcaaaaacaccacatgcaggctgcactcttgttgtcacaaatgccaagtg 12294008  T
Q  117 atcttgttggagaaaaattggaaacacagagattatacgatgctgttaatgtcatcctctctctacaagtatgtatacatgtttttcctttctaattcat 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12294007 atcttgttggagaaaaattggaaacagagagattatacgatgctgttaatgtcatcctctctctacaagtatgtatacatgtttttcctttctaattcat 12293908  T
Q  217 gttatcatataacgaaggcttagctgtatttgtgaccctttaacttttaaaaagttgcgatttttgccttcttac-nnnnnnnnnncattttacccctta 315  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||           ||||||||||||||    
T  12293907 gttatcatataatgaaggcttagctgtatttgtgaccccttaacttttagaaagttgcaatttttgccttcttacaaaaaaaaaaacattttacccctta 12293808  T
Q  316 attttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||    
T  12293807 attttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggttaaaatcgcaactttttgtaaagatagagggccaaaaacaat 12293708  T
Q  416 aaatttccctaaagttatggggtcaaaagagcatatttccttaaaaatagaggacaaagttcttttttggatcaaaatcgtaacgttttgaaacataagg 515  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  12293707 aaatttccctaaagttatgaggtcaaaagagcatatttccttaaagatagaggacaaagtttttttttggaccgaaatcgtaacgttttgaaacataagg 12293608  T
Q  516 tggaaacactacatttaaacctataatgaattgattcttggtgttgttcttttctatgtctcacgtatatatgatattcat 596  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  12293607 tggaaaaactacatttaaacctataatgaattgattcttggtgttgttcttttctcagtctcacgtatatatgatattcat 12293527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 35182639 - 35182533
Alignment:
Q  77 cacatgcaggctgcactcttgttatcacaaatgccaagtgatcttgttggagaaaaattggaaacacagagattatacgatgctgttaatgtcatcctct 176  Q
    ||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||| || || || | |||||||||||||||||||||||||    
T  35182639 cacatgcaggccgcactcctgttgtcaaaaatgccaagtgatcttgttggagaaaaattggaatcagagcgactctacgatgctgttaatgtcatcctct 35182540  T
Q  177 ctctaca 183  Q
    | |||||    
T  35182539 cgctaca 35182533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 29365534 - 29365427
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagag 402  Q
    |||||| |||||||||||||||||||||||||| || |||||||||||| | |||| ||||| | |||||| ||||| |||||||||||| |||||| ||    
T  29365534 attttatcccttaattttacaaaacgttgcaaagctgctgagaagacgccatgtgtgccaaagcggggggccaaaattgcaactttttgtaaagataaag 29365435  T
Q  403 ggcaaaaa 410  Q
    ||| ||||    
T  29365434 ggccaaaa 29365427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 12326950 - 12326829
Alignment:
Q  71 aaacaccacatgcaggctgcactcttgttatcacaaatgccaagtgatcttgttggagaaaaattggaaacacagagattatacgatgctgttaatgtca 170  Q
    ||||| ||| |||||||  ||||| | || ||||||||||| | || ||| |||||||||||| |||||||| || |||| || |||||||||||||| |    
T  12326950 aaacaacacttgcaggccacactcctattgtcacaaatgcctactgctctcgttggagaaaaaatggaaacagagcgattctatgatgctgttaatgtga 12326851  T
Q  171 tcctctctctacaagtatgtat 192  Q
    ||||||||||||||||| ||||    
T  12326850 tcctctctctacaagtacgtat 12326829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 35102590 - 35102712
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | ||| |||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  35102590 ctgagaagacgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 35102686  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  35102687 aaaagagcatatttccctaaacatag 35102712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 465
Target Start/End: Complemental strand, 18791561 - 18791440
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| |||||||| |||| | ||||| | |||||||||||||||| |||||   |||  |||||| ||  |||||||| | |||| |||||||    
T  18791561 tgagaagacgccacgtgtcctaaaa-aaggggccataatcgcaactttttgtaaagatgaggggtcaaaaagcat--atttcccttatgttagggggtca 18791465  T
Q  441 aaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||| |||| ||||    
T  18791464 aaagagcatatttccctaaacatag 18791440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 410
Target Start/End: Original strand, 34192146 - 34192247
Alignment:
Q  309 ccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaa 408  Q
    |||||||||||||||||| |||||| | | ||| ||||||||  |||||| ||||||||| | |  |||||||||||||| ||| |||||| ||||| ||    
T  34192146 ccccttaattttacaaaatgttgcatagccactaagaagacgtcacgtgttccaaaacagagaggcaaaatcgcaactttatgtaaagataaagggctaa 34192245  T
Q  409 aa 410  Q
    ||    
T  34192246 aa 34192247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 11661006 - 11661077
Alignment:
Q  328 gttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    ||||||||||| || ||||||| | || |||||||||| | ||||| |||||||||||||||||| ||||||    
T  11661006 gttgcaaaactgcttagaagacaccacatgtcccaaaataaggggccaaaatcgcaactttttgtaaagata 11661077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 24603566 - 24603444
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| | |||||| |||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  24603566 ctgagaagacgccatgtgtccaaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 24603470  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  24603469 aaaagagcatatttccctaaacatag 24603444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 25819889 - 25819767
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  25819889 ctgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 25819793  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    | ||||| |||||||| |||| ||||    
T  25819792 agaagagtatatttccctaaacatag 25819767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 465
Target Start/End: Original strand, 26710398 - 26710528
Alignment:
Q  332 caaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagtt 431  Q
    ||||| ||||||||||| || ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  ||||  || | |||| ||| | |||    
T  26710398 caaaattactgagaagatgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa--aacatattttccttatgtt 26710494  T
Q  432 atggggtcaaaagagcatatttccttaaaaatag 465  Q
    | | |||||||||||||||||||| |||| ||||    
T  26710495 aggaggtcaaaagagcatatttccctaaacatag 26710528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 453
Target Start/End: Complemental strand, 31210999 - 31210889
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||| | ||||||||||||| ||| | ||| |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  31210999 ctgagaagacaccacgtgtcccaaaaaaggtg-ctataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 31210903  T
Q  440 aaaagagcatattt 453  Q
    ||||||||||||||    
T  31210902 aaaagagcatattt 31210889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 455
Target Start/End: Complemental strand, 9241865 - 9241746
Alignment:
Q  332 caaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagtt 431  Q
    ||||| |||||||||| ||| | |||||||||||||| |||| | ||||||||||||||| ||||||| ||||   ||||||  | |||||||| | |||    
T  9241865 caaaattactgagaaggcgccatgtgtcccaaaacagagggc-ataatcgcaactttttgagaagata-aggggtcaaaagatcatatttcccttatgtt 9241768  T
Q  432 atggggtcaaaagagcatatttcc 455  Q
    |  ||||||||||| |||||||||    
T  9241767 a--gggtcaaaagaacatatttcc 9241746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 3118809 - 3118759
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttccttaaaaatagagg 468  Q
    |||||||| | |||| |||||||||||||||||||||| |||| |||||||    
T  3118809 atttcccttatgttagggggtcaaaagagcatatttccctaaacatagagg 3118759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 454
Target Start/End: Complemental strand, 32451930 - 32451820
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| || |||| ||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | |||||    
T  32451930 tgagaagacgccacatgtctcaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtca 32451834  T
Q  441 aaagagcatatttc 454  Q
    ||||||||||||||    
T  32451833 aaagagcatatttc 32451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 20863814 - 20863885
Alignment:
Q  327 cgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||| ||||| | |||||||||||| | ||||||||||| | ||||| | |||||||||||||||| ||||||    
T  20863814 cgttccaaaattgctgagaagacgccatgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagata 20863885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 2053421 - 2053333
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaa-ctactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaacttttt 390  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||| || |||| |||||||||||||||||||||| ||||||||||    
T  2053421 attttgccccttaattttacaaaacgttgcaaaaactaatgagaagatgccacgtatcccaaaacagggggctaaaattgcaacttttt 2053333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 468
Target Start/End: Original strand, 4807692 - 4807824
Alignment:
Q  333 aaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagtta 432  Q
    |||| |||||||||||||| |||||| |||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | ||||    
T  4807692 aaaattactgagaagacgccacgtgttccaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgtta 4807788  T
Q  433 tggggtcaaaagagcatatttccttaaaaatagagg 468  Q
     | |||||||||| |||||||||||||| |||||||    
T  4807789 ggaggtcaaaagaacatatttccttaaacatagagg 4807824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 16233700 - 16233604
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    ||||||||||||||  ||||||||| |||||||  | ||||||||||   ||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  16233700 attttaccccttaaacttacaaaacattgcaaagttgctgagaagacatcacgtgtcccaaaacagggggccataattgcaactttttgtaaagata 16233604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 38630260 - 38630138
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  38630260 ctgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 38630164  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  38630163 aaaagagcatatttccctaaacatag 38630138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 5192370 - 5192492
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata-gagggcaaaaaagaataaatttccctaaagttatggggt 438  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| |||||| |||| ||||||| |    |||||||| | |||| | |||    
T  5192370 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataatcgcaactttttgtaaagataagaggtcaaaaaacat---atttcccttatgttaagaggt 5192465  T
Q  439 caaaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||||| |||| ||||    
T  5192466 caaaagagcatatttccctaaacatag 5192492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 17648448 - 17648326
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    ||||||||| || |||||||| |||| ||||||| | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  17648448 ctgagaagaggccacgtgtcctaaaa-agggggccataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 17648352  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  17648351 aaaagagcatatttccctaaacatag 17648326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 19391486 - 19391608
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  ||||  || | |||||||| | |||| | ||||    
T  19391486 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa--aacatatttcccttatgttaggaggtc 19391582  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  19391583 aaaagagcatatttccctaaacatag 19391608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 19924470 - 19924348
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  19924470 ctgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 19924374  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    | ||||| |||||||| |||| ||||    
T  19924373 agaagagtatatttccctaaacatag 19924348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 22452272 - 22452389
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata-gagggcaaaaaagaataaatttccctaaagttatggggt 438  Q
    |||||||||||| ||||||||||||| | ||| ||| | |||||||||||||| |||||| |||| |||||| | |||  ||||||| | |||| | |||    
T  22452272 ctgagaagacgccacgtgtcccaaaaaaaggg-ctatattcgcaactttttgtaaagataagaggtcaaaaa-gcata--tttcccttatgttaggaggt 22452367  T
Q  439 caaaagagcatatttccttaaa 460  Q
    ||||||||||||||||| ||||    
T  22452368 caaaagagcatatttccctaaa 22452389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 465
Target Start/End: Original strand, 4518967 - 4519088
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  ||||  || | |||||||| | |||| | | |||    
T  4518967 tgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa--aacatatttcccttatgttaggagatca 4519063  T
Q  441 aaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||| |||| ||||    
T  4519064 aaagagcatatttccctaaacatag 4519088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 41688209 - 41688267
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||||||||| ||||||||||||||||| ||| | | ||||||||||||||| |||||||    
T  41688209 ctgagaagacactacgtgtcccaaaacatgggtc-ataatcgcaactttttgagaagata 41688267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 15869437 - 15869493
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaaga 397  Q
    |||||||| ||| ||||||||||||||||||| | | ||||||||||||||| |||||    
T  15869437 ctgagaagtcgccacgtgtcccaaaacaggggtc-ataatcgcaactttttgagaaga 15869493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 16236514 - 16236583
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacaggggg 372  Q
    ||||||||| |||| |||| |||||||| |||| ||  ||||||||||| || ||| |||||||||||||    
T  16236514 attttaccctttaaatttagaaaacgttacaaagctgttgagaagacgccacatgtaccaaaacaggggg 16236583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 24359827 - 24359860
Alignment:
Q  252 ccctttaacttttaaaaagttgcgatttttgcct 285  Q
    |||| |||||||||||||||||||||||||||||    
T  24359827 ccctctaacttttaaaaagttgcgatttttgcct 24359860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 310 - 454
Target Start/End: Complemental strand, 2123611 - 2123468
Alignment:
Q  310 cccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaa 409  Q
    ||||||||||||| ||||||||||||  | |||||||||||| || ||||||||||||||| |  ||||| |||||||||||| |||||| ||||   ||    
T  2123611 cccttaattttacgaaacgttgcaaagatgctgagaagacgccacatgtcccaaaacagggtgtcaaaattgcaactttttgtaaagataaaggg-tcaa 2123513  T
Q  410 aagaataaatttccctaaagttatggggtcaaaagagcatatttc 454  Q
    |||||   |||||||||||| ||  || |||||||||||||||||    
T  2123512 aagaacttatttccctaaagatagaggatcaaaagagcatatttc 2123468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 13645868 - 13645962
Alignment:
Q  310 cccttaattttacaaaacgttgcaaaact--actgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagg 403  Q
    |||||||||||||||||||||||||| ||  | ||||||||||| |||||||||| | |||||||| ||||| ||||| |||||| ||||||||||    
T  13645868 cccttaattttacaaaacgttgcaaagctctaatgagaagacgccacgtgtcccacatcagggggccaaaattgcaac-ttttgtaaagatagagg 13645962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 18537927 - 18538049
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | ||| |||||||||||| ||||||  |||  |||||| |||  ||||||||| |||||| ||||    
T  18537927 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataattgcaactttttgtaaagataaggggtcaaaaagcata--tttccctaatgttatgaggtc 18538023  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||| ||||||||||| |||| ||||    
T  18538024 aaaaaagcatatttccctaaacatag 18538049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 11176112 - 11175990
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||| ||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  11176112 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataatcacaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 11176016  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  11176015 aaaagagcatatttccctaaacatag 11175990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 460
Target Start/End: Complemental strand, 38716398 - 38716281
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  |||||| ||  ||||| || | |||| | ||||    
T  38716398 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttctcttatgttaggaggtc 38716302  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  38716301 aaaagagcatatttccctaaa 38716281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 341 - 460
Target Start/End: Original strand, 26829189 - 26829305
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    |||||||||||||||| |||||||| ||||||| | |||| |||||||||| || |||| ||||   ||||||  | |||||||| | |||| ||||||     
T  26829189 tgagaagacgctacgt-tcccaaaaaagggggccataatcacaactttttgagatgata-aggggtcaaaagatcatatttcccttatgtta-ggggtcc 26829285  T
Q  441 aaagagcatatttccttaaa 460  Q
    ||||||||||||||||||||    
T  26829286 aaagagcatatttccttaaa 26829305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 2986891 - 2986769
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| | |||||| |||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  2986891 ctgagaagacgccatgtgtccaaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 2986795  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  2986794 aaaagagcatatttccctaaacatag 2986769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 9787764 - 9787642
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | ||||| |||||||||| ||||||  |||  |||||| ||  |||||||| | ||||   ||||    
T  9787764 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgtaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttagcaggtc 9787668  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  9787667 aaaagagcatatttccctaaacatag 9787642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 9051127 - 9051248
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata-gagggcaaaaaagaataaatttccctaaagttatggggt 438  Q
    ||||||||||||  |||||||||||| ||||  | | |||||||||||||||| |||||| |||| |||||| | |||  ||||||| | |||| | |||    
T  9051127 ctgagaagacgccccgtgtcccaaaaaaggg--ccataatcgcaactttttgtaaagataagaggtcaaaaa-gcata--tttcccttatgttaggaggt 9051221  T
Q  439 caaaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||||| |||| ||||    
T  9051222 caaaagagcatatttccctaaacatag 9051248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 455
Target Start/End: Original strand, 30714373 - 30714485
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| || |||||||||| ||||| | | |||| ||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  30714373 ctgagaagacgccacatgtcccaaaaaaggggcc-ataatcacaactttttgtaaagataacgggtcaaaaagcata--tttcccttatgttaggaggtc 30714469  T
Q  440 aaaagagcatatttcc 455  Q
    ||||||||||||||||    
T  30714470 aaaagagcatatttcc 30714485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 455
Target Start/End: Complemental strand, 15735268 - 15735157
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  ||||   | | |||||||| | |||| | |||||    
T  15735268 tgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa--tacatatttcccttatgttacgaggtca 15735172  T
Q  441 aaagagcatatttcc 455  Q
    |||||||||||||||    
T  15735171 aaagagcatatttcc 15735157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 32678035 - 32678090
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttccttaaaaatagaggacaaa 473  Q
    |||||| ||||||||  ||||||||||||||||||||||| || ||||||| ||||    
T  32678035 atttccataaagttagagggtcaaaagagcatatttccttgaagatagagggcaaa 32678090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 6763816 - 6763938
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | |||||   |||||| ||||||||| ||||||  |||  |||||| ||  |||| ||| | |||| | ||||    
T  6763816 ctgagaagacgccacgtgtcccaaaa-aaggggccgtaatcgctactttttgtaaagataaggggtcaaaaagcat--attttccttatgttaggaggtc 6763912  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  6763913 aaaagagcatatttccctaaacatag 6763938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 450
Target Start/End: Complemental strand, 17368420 - 17368314
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| ||||||||||||| | ||||| | ||| |||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | |||||    
T  17368420 tgagaagacgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtca 17368324  T
Q  441 aaagagcata 450  Q
    ||||||||||    
T  17368323 aaagagcata 17368314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 21206523 - 21206453
Alignment:
Q  322 caaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgt 392  Q
    |||||||||||| |||||| |||||||| | | |||||| |||||||||| | |||| | |||||||||||    
T  21206523 caaaacgttgcataactacagagaagacaccatgtgtccaaaaacaggggaccaaaaccacaactttttgt 21206453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 21773431 - 21773488
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||||||| || |||||||||| |||||||| ||||||||||||||||||  |||||||    
T  21773431 tgagaagaagccacgtgtcccagaacagggg-ctaaaatcgcaacttttttagaagata 21773488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 33199700 - 33199671
Alignment:
Q  306 ttaccccttaattttacaaaacgttgcaaa 335  Q
    ||||||||||||||||||||||||||||||    
T  33199700 ttaccccttaattttacaaaacgttgcaaa 33199671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 36199683 - 36199587
Alignment:
Q  307 taccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagaggg 404  Q
    |||||||||||||||||||| |||| ||| || || || |||||| |  ||| |||||| ||||| | ||||| |||||||||||| |||||| ||||    
T  36199683 taccccttaattttacaaaatgttgtaaagctgcttaggagacgccatatgttccaaaataggggtc-aaaattgcaactttttgtaaagataaaggg 36199587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 34296408 - 34296495
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaacttttt 390  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||  |||||| ||||||||||| || ||||| ||||||||||    
T  34296408 attttaccccttaattttacaaaatgttgaaaagctactgagaagacgtcacgtgttccaaaacagggagccaaaattgcaacttttt 34296495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 1718409 - 1718326
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaact 386  Q
    ||||||||||||| |||||||||||||||||||  |  |||||| |||| ||||||||||||||||| ||| ||||| ||||||    
T  1718409 attttaccccttagttttacaaaacgttgcaaagatgttgagaaaacgccacgtgtcccaaaacaggaggccaaaattgcaact 1718326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 26628124 - 26628246
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  26628124 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 26628220  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  26628221 aaaagagcatatttccctaaacatag 26628246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 460
Target Start/End: Complemental strand, 4522159 - 4522042
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  4522159 ctgagaagacgccacgtgtcccaaaa-aaggggcaataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaagaggtc 4522063  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  4522062 aaaagagcatatttccctaaa 4522042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 401
Target Start/End: Complemental strand, 36033828 - 36033732
Alignment:
Q  304 ttttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagataga 401  Q
    |||| ||| |||| |||||||||||||| ||||||| ||||||||||| |||||||||||  || ||||| ||||| |||||||||||| || |||||    
T  36033828 ttttgcccattaactttacaaaacgttgtaaaactaatgagaagacgccacgtgtcccaactca-ggggccaaaattgcaactttttgtaaatataga 36033732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 13081099 - 13080977
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||| | || |||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||||| ||||    
T  13081099 ctgagaagactccacatgtcccaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttatgaggtc 13081003  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  13081002 aaaagagcatatttccctaaatatag 13080977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 465
Target Start/End: Original strand, 27852852 - 27852972
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| |||||||||||||   ||||| | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | |||||    
T  27852852 tgagaagacgccacgtgtcccaaaaa--ggggccataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtca 27852947  T
Q  441 aaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||| |||| ||||    
T  27852948 aaagagcatatttccctaaacatag 27852972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 48907391 - 48907513
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||| | ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  48907391 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttttaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 48907487  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  48907488 aaaagagcatatttccctaaacatag 48907513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 3328912 - 3329029
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  |||| | ||  |||||||| | |||| | ||||    
T  3328912 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaaggcat--atttcccttatgttaggaggtc 3329008  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  3329009 aaaagagcatatttccctaaa 3329029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 460
Target Start/End: Complemental strand, 3781083 - 3780967
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||| | ||||||||||||| ||||| | | | |||||||||||||| |||||| ||||  |||||| |||  ||||||| | |||| ||||||    
T  3781083 ctgagaagacaccacgtgtcccaaaaaaggggtc-atattcgcaactttttgtaaagataaagggtcaaaaagcata--tttcccttatgtta-ggggtc 3780988  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  3780987 aaaagagcatatttccctaaa 3780967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 8542815 - 8542693
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||| ||||| ||||| | | ||| |||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  8542815 ctgagaagacgccacgtgtcacaaaaaaggggcc-ataattgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 8542719  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  8542718 aaaagagcatatttccctaaacatag 8542693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 28154981 - 28155098
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata-gagggcaaaaaagaataaatttccctaaagttatggggt 438  Q
    |||||||||||| ||||||||||||| | ||| | | |||||||||||||||| |||||| |||| |||||| | |||  ||||||| | |||| | |||    
T  28154981 ctgagaagacgccacgtgtcccaaaaaaagggcc-ataatcgcaactttttgtaaagataagaggtcaaaaa-gcata--tttcccttatgttaggaggt 28155076  T
Q  439 caaaagagcatatttccttaaa 460  Q
    ||||||||||||||||| ||||    
T  28155077 caaaagagcatatttccctaaa 28155098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 469
Target Start/End: Original strand, 28173832 - 28173954
Alignment:
Q  344 gaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaaa 443  Q
    ||||| || |||||||||| || ||||| | | |||||||||||||||| ||||||  |||  |||||  |||  ||||||| | |||| ||||||||||    
T  28173832 gaagatgccacgtgtcccagaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaaacata--tttcccttatgttagggggtcaaaa 28173928  T
Q  444 gagcatatttccttaaaaatagagga 469  Q
    |||||||||||| |||| ||||||||    
T  28173929 gagcatatttccctaaacatagagga 28173954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 392
Target Start/End: Complemental strand, 43668645 - 43668582
Alignment:
Q  328 gttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgt 392  Q
    ||||||||| | |||||||||||| || |||||||||||||||| | | ||||||||||||||||    
T  43668645 gttgcaaaattgctgagaagacgccacatgtcccaaaacaggggtc-ataatcgcaactttttgt 43668582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 34296554 - 34296609
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttccttaaaaatagaggacaaa 473  Q
    |||||| ||||||||  ||||||||||||||||||||| |||| ||| ||||||||    
T  34296554 atttccataaagttagagggtcaaaagagcatatttccctaaagataaaggacaaa 34296609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 54454023 - 54454102
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgc 382  Q
    |||||||||  ||| |||| |||| |||||||||   || ||||||||  ||||||||||||||||||||| ||||||||    
T  54454023 attttaccctataactttagaaaatgttgcaaaatcgcttagaagacgtcacgtgtcccaaaacagggggccaaaatcgc 54454102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 465
Target Start/End: Original strand, 25022765 - 25022884
Alignment:
Q  343 agaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaa 442  Q
    |||||| || |||||||||| || ||||| | | |||||||||||||||| |||||| ||||   |||| || | || ||||| | ||||||||||||||    
T  25022765 agaagatgccacgtgtcccagaaaaggggtc-ataatcgcaactttttgtaaagata-agggttcaaaa-aacatatatcccttatgttatggggtcaaa 25022861  T
Q  443 agagcatatttccttaaaaatag 465  Q
    ||||||||||||| |||| ||||    
T  25022862 agagcatatttccctaaacatag 25022884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 21071535 - 21071631
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||||||||| ||| ||||||||||||||||||| | || ||  ||| | |||||||||||| || || || | |||| |||| |||||| ||||||    
T  21071535 attttaccccctaactttacaaaacgttgcaaaattgcttagtggacaccacgtgtcccaaaccaaggtgccataatcacaacattttgtaaagata 21071631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 244 - 460
Target Start/End: Complemental strand, 47113419 - 47113202
Alignment:
Q  244 atttgtgaccctttaacttttaaaaagttgcgatttttgccttcttacnnnnnnnnnnc-attttacccct--taattttacaaaacgttgcaaaactac 340  Q
    ||||||||||| ||||||||||||||||||||||||| |||  || ||          | |||||| ||||  ||||||||||||||||| |||| || |    
T  47113419 atttgtgaccccttaacttttaaaaagttgcgattttggccccctaacaaaaaaaaaacaattttaacccttataattttacaaaacgttacaaagctgc 47113320  T
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    | | ||||||| ||||||||||||||| ||||| |||||||||||||||| | |||||| |||||  ||||||    |||||||||||| ||  ||| ||    
T  47113319 taaaaagacgccacgtgtcccaaaaca-ggggccaaaatcgcaactttttataaagataaagggc-caaaagatcttatttccctaaagatagagggcca 47113222  T
Q  441 aaagagcatatttccttaaa 460  Q
    ||||||||||||||| ||||    
T  47113221 aaagagcatatttccctaaa 47113202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 303 - 404
Target Start/End: Original strand, 43516942 - 43517043
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagag 402  Q
    ||||||| |||| ||||||||||||||| |||| || |||||||||||| ||||||| |||||||||| |  ||||| | |||||||||| |||||| ||    
T  43516942 attttactccttcattttacaaaacgttacaaagctgctgagaagacgccacgtgtctcaaaacagggtgtcaaaattgaaactttttgtaaagataaag 43517041  T
Q  403 gg 404  Q
    ||    
T  43517042 gg 43517043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 5776995 - 5776907
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttg 391  Q
    |||||||||||| |||||||||||||||||||| ||  ||||||||||   | ||| |||||||| ||||| |||||||||||||||||    
T  5776995 attttaccccttgattttacaaaacgttgcaaagctgttgagaagacgtcgcatgttccaaaacatggggccaaaatcgcaactttttg 5776907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 309 - 399
Target Start/End: Complemental strand, 22589436 - 22589346
Alignment:
Q  309 ccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    ||||||||||||||||||||||||||||| ||| |||||| || |||| ||| ||||| | |||| ||||| |||| ||||||| ||||||    
T  22589436 ccccttaattttacaaaacgttgcaaaaccactaagaagatgccacgtatcctaaaactgagggccaaaattgcaattttttgtaaagata 22589346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 465
Target Start/End: Original strand, 35337622 - 35337743
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | |||||    
T  35337622 tgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtca 35337718  T
Q  441 aaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||| |||| ||||    
T  35337719 aaagagcatatttccctaaacatag 35337743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 3562532 - 3562654
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| |||||||| |||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  3562532 ctgagaagacgccacgtgtcctaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 3562628  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  3562629 aaaagagcatatttccctaaacatag 3562654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 20636824 - 20636702
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    ||||||| |||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  20636824 ctgagaaaacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 20636728  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  20636727 aaaagagcatatttccctaaacatag 20636702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 27869294 - 27869416
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| | ||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  27869294 ctgagaagacgccatgtgtcccaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 27869390  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  27869391 aaaagagcatatttccctaaacatag 27869416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 473
Target Start/End: Complemental strand, 39296641 - 39296576
Alignment:
Q  408 aaaagaataaatttccctaaagttatggggtcaaaagagcatatttccttaaaaatagaggacaaa 473  Q
    |||||| || |||||| ||||||||  ||||||||||||||||||||| |||| ||||||||||||    
T  39296641 aaaagagtatatttccataaagttagagggtcaaaagagcatatttccctaaagatagaggacaaa 39296576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 392
Target Start/End: Complemental strand, 39296756 - 39296681
Alignment:
Q  317 ttttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgt 392  Q
    |||||||||| ||| |||| || |||||||||||| ||||| ||||||| ||||||  ||||| ||||||||||||    
T  39296756 ttttacaaaatgttacaaagctgctgagaagacgccacgtgccccaaaatagggggtcaaaattgcaactttttgt 39296681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 13577885 - 13578006
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| |||||| |||||| ||||| | | |||  |||||||||||  ||||| ||||  |||||| |||  ||||||| | |||| ||||||    
T  13577885 ctgagaagacgccacgtgttccaaaaaaggggcc-ataatttcaactttttgtatagataaagggtcaaaaagcata--tttcccttatgtta-ggggtc 13577980  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||||||||| ||||    
T  13577981 aaaagagcatatttccttaaacatag 13578006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 21224451 - 21224573
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||| ||||| | ||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  21224451 ctgagaagacgccacgtgtctcaaaaaaagggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 21224547  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  21224548 aaaagagcatatttccctaaacatag 21224573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 460
Target Start/End: Original strand, 4571461 - 4571560
Alignment:
Q  359 cccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaaagagcatatttcctta 458  Q
    ||||||||||||| | | ||||||||||||||| ||||||| ||||   ||||||  | |||||||| | |||||||||| |||||||||||||||| ||    
T  4571461 cccaaaacaggggcc-acaatcgcaactttttgagaagata-aggggtcaaaagatcatatttcccttatgttatggggtaaaaagagcatatttcccta 4571558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 456
Target Start/End: Original strand, 19919702 - 19919815
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    ||||||| |||||||||||||||||| | ||||||| |||| ||||||||||| ||||||  |||  ||||  || | |||| ||| | |||| | ||||    
T  19919702 ctgagaaaacgctacgtgtcccaaaa-aaggggctataatcacaactttttgtaaagataaggggtcaaaa--aacatattttccttatgttaggaggtc 19919798  T
Q  440 aaaagagcatatttcct 456  Q
    |||||||||||||||||    
T  19919799 aaaagagcatatttcct 19919815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 484
Target Start/End: Original strand, 29747058 - 29747107
Alignment:
Q  435 gggtcaaaagagcatatttccttaaaaatagaggacaaagttcttttttg 484  Q
    ||||||||||||||||||| |||||||||||||| |||| || |||||||    
T  29747058 gggtcaaaagagcatattttcttaaaaatagagggcaaaattgttttttg 29747107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 465
Target Start/End: Original strand, 36746603 - 36746724
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||| | ||  ||||| || | |||| | |||||    
T  36746603 tgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggttaaaaggcat--atttctcttatgttaggaggtca 36746699  T
Q  441 aaagagcatatttccttaaaaatag 465  Q
    ||||||||||||||| |||| ||||    
T  36746700 aaagagcatatttccctaaacatag 36746724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 18754440 - 18754491
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttccttaaaaatagagga 469  Q
    |||||||| | |||| |||||||||||||||||||||| |||| ||||||||    
T  18754440 atttcccttatgttagggggtcaaaagagcatatttccctaaacatagagga 18754491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 453
Target Start/End: Complemental strand, 14624807 - 14624698
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    ||||||| | || ||||||||||||| ||||| | | ||| |||||||||||| |||||| ||||  |||||| |||  ||||||| | |||||||| ||    
T  14624807 ctgagaacatgccacgtgtcccaaaaaaggggcc-ataattgcaactttttgtaaagataaagggtcaaaaagtata--tttcccttatgttatggg-tc 14624712  T
Q  440 aaaagagcatattt 453  Q
    ||||||||||||||    
T  14624711 aaaagagcatattt 14624698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 460
Target Start/End: Original strand, 23461104 - 23461238
Alignment:
Q  324 aaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagg-gcaaaaaagaataaatttc 422  Q
    ||||||||||||  |  ||||||| ||| ||||||||||||||||||| | | |||||||||||||||  | |||| |||  ||||| |||||  |||||    
T  23461104 aaacgttgcaaagttgttgagaagccgccacgtgtcccaaaacaggggtc-ataatcgcaactttttgaaatgataaaggatcaaaagagaat--atttc 23461200  T
Q  423 cctaaagttatggggtcaaaagagcatatttccttaaa 460  Q
     || ||||||  ||||||||| | ||||||||||||||    
T  23461201 tcttaagttagagggtcaaaataacatatttccttaaa 23461238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 460
Target Start/End: Complemental strand, 26126445 - 26126342
Alignment:
Q  354 cgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaaagagcatattt 453  Q
    |||||||||||||||||| | | ||||||||||||||| ||||||| ||||   ||||||  | |||||||| | |||| |||||||||| |||||||||    
T  26126445 cgtgtcccaaaacaggggcc-ataatcgcaactttttgagaagata-aggggtcaaaagatcatatttcccttatgtta-ggggtcaaaaaagcatattt 26126349  T
Q  454 ccttaaa 460  Q
    || ||||    
T  26126348 ccctaaa 26126342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 42271537 - 42271415
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| |||||| |||||| | ||| | | |||||||||||||||| || |||  |||  |||||| |||  ||||||| | |||| | ||||    
T  42271537 ctgagaagacgccacgtgttccaaaaaaagggcc-ataatcgcaactttttgtaaacataaggggtcaaaaagcata--tttcccttatgttaggaggtc 42271441  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  42271440 aaaagagcatatttccctaaacatag 42271415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 453
Target Start/End: Complemental strand, 17305969 - 17305859
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| || |||||||||| ||||||  | |||| ||||||||||| || |||  |||  |||||| ||  |||||||| | |||| | |||||    
T  17305969 tgagaagacgccacatgtcccaaaaaagggggtcataatcacaactttttgtaaaaataaggggtcaaaaagcat--atttcccttatgttaggaggtca 17305872  T
Q  441 aaagagcatattt 453  Q
    |||||||||||||    
T  17305871 aaagagcatattt 17305859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 20228306 - 20228230
Alignment:
Q  318 tttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    ||||||||||||||||||||| ||||||| ||||||| |||     |||||| ||| ||||||  |||||||||| ||||||    
T  20228306 tttacaaaacgttgcaaaactgctgagaaaacgctacatgt-----aacaggaggccaaaatcataactttttgtaaagata 20228230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 465
Target Start/End: Complemental strand, 20638660 - 20638574
Alignment:
Q  377 aatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | |||||||||||||||||||| |||| ||||    
T  20638660 aatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtcaaaagagcatatttccctaaacatag 20638574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 460
Target Start/End: Complemental strand, 39182139 - 39182023
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    ||||||| || | |||||||||||||||| || | | ||||||||||||||| ||||||| ||||   ||||||  | |||||||| | |||||||  ||    
T  39182139 ctgagaaaacaccacgtgtcccaaaacagaggcc-ataatcgcaactttttgagaagata-aggggtcaaaagatcatatttcccttatgttatgg--tc 39182044  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  39182043 aaaagagcatatttccctaaa 39182023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 41452348 - 41452465
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||  ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  41452348 ctgagaagacgacacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 41452444  T
Q  440 aaaagagcatatttccttaaa 460  Q
    | ||||| |||||||| ||||    
T  41452445 agaagagtatatttccctaaa 41452465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 465
Target Start/End: Complemental strand, 22589290 - 22589250
Alignment:
Q  425 taaagttatggggtcaaaagagcatatttccttaaaaatag 465  Q
    ||||||||  |||||||||||||||||||||||||| ||||    
T  22589290 taaagttagagggtcaaaagagcatatttccttaaagatag 22589250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 47113212 - 47113176
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttc 454  Q
    |||||||||||||||  ||||||||||||||||||||    
T  47113212 atttccctaaagttagagggtcaaaagagcatatttc 47113176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 404
Target Start/End: Complemental strand, 14857574 - 14857473
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagag 402  Q
    ||||| |||||||||||||||||||||||| || | | ||||||||||| | ||||||||||| ||||||| ||||| | |||||||||| |||||| ||    
T  14857574 attttgccccttaattttacaaaacgttgcgaagcaaatgagaagacgccatgtgtcccaaaatagggggcaaaaattgaaactttttgtaaagataaag 14857475  T
Q  403 gg 404  Q
    ||    
T  14857474 gg 14857473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 404
Target Start/End: Original strand, 43336001 - 43336102
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagag 402  Q
    ||||||||||||||||||| ||||||||||||| ||  ||||||||||| |||||||   |||||||| ||  ||||||||||||||||| |||||| ||    
T  43336001 attttaccccttaattttataaaacgttgcaaagctgttgagaagacgccacgtgtcttgaaacagggagccgaaatcgcaactttttgtaaagataaag 43336100  T
Q  403 gg 404  Q
    ||    
T  43336101 gg 43336102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 15058917 - 15059039
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||||| |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  15058917 ctgagaagacgccacgtgtcccaaaa-aaggggctataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 15059013  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  15059014 aaaagagcatatttccctaaacatag 15059039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 455
Target Start/End: Original strand, 13826518 - 13826630
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||||| |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  13826518 ctgagaagacgccacgtgtcccaaaa-aaggggctataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 13826614  T
Q  440 aaaagagcatatttcc 455  Q
    ||||||||||||||||    
T  13826615 aaaagagcatatttcc 13826630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 13397774 - 13397896
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  13397774 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 13397870  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  13397871 aaaagagcatatttccctaaacatag 13397896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 12101188 - 12101283
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||||||| ||||||||||| |||  |||||||||| |||||||||||| || |||| ||||||||| | | ||||| |||||||||||| ||||||    
T  12101188 attttaccacttaattttaccaaatcttgcaaaactgctgagaagacgccacatgtctcaaaacaggagtc-aaaattgcaactttttgtaaagata 12101283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 16291779 - 16291898
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||| |||||||||||||||  ||||| ||||||||||| |||||| |||| | ||||||    |||||||||||| ||  |||      
T  16291779 ctgagaagacgccacgtgacccaaaacagggggcctaaatcacaactttttgtaaagata-aggggacaaaagatcttatttccctaaagatagagggct 16291877  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  16291878 aaaagagcatatttccctaaa 16291898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 455
Target Start/End: Complemental strand, 4098860 - 4098749
Alignment:
Q  342 gagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaa 441  Q
    |||||||||| ||||||||||||| ||||| || || | ||||||||||| ||||||| ||||   ||||||  | |||||||| | |||| ||||||||    
T  4098860 gagaagacgccacgtgtcccaaaaaaggggccttaatt-gcaactttttgagaagata-aggggtcaaaagatcatatttcccttatgttagggggtcaa 4098763  T
Q  442 aagagcatatttcc 455  Q
    ||||||||||||||    
T  4098762 aagagcatatttcc 4098749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 1521594 - 1521654
Alignment:
Q  308 accccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacag 368  Q
    ||||||||||||||||||||||| |||| || |||||||||||  || |||||||||||||    
T  1521594 accccttaattttacaaaacgttccaaagctgctgagaagacgtcacatgtcccaaaacag 1521654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 16964864 - 16964828
Alignment:
Q  244 atttgtgaccctttaacttttaaaaagttgcgatttt 280  Q
    |||||||||||||||||||||||||||||||||||||    
T  16964864 atttgtgaccctttaacttttaaaaagttgcgatttt 16964828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 22057320 - 22057416
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||||||||| ||| || | ||||||||||||||||  | | || |||| |||||||||||||||||||||   ||||||||| |||||| ||||||    
T  22057320 attttaccccataacttgataaaacgttgcaaaactgtttaaaaaacgccacgtgtcccaaaacagggggccggaatcgcaacattttgtaaagata 22057416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 465
Target Start/End: Original strand, 5304437 - 5304568
Alignment:
Q  331 gcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagt 430  Q
    |||||| | |||||||||||| ||||||||||||| |  |||| | |||||||||||||||| ||||||  |||  |||||| ||  |||| ||| | ||    
T  5304437 gcaaaattgctgagaagacgccacgtgtcccaaaa-aatgggccataatcgcaactttttgtaaagataaggggtcaaaaagcat--attttccttatgt 5304533  T
Q  431 tatggggtcaaaagagcatatttccttaaaaatag 465  Q
    || | |||||||||||||||||||| |||| ||||    
T  5304534 taggaggtcaaaagagcatatttccctaaacatag 5304568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 10758748 - 10758690
Alignment:
Q  309 ccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaaca 367  Q
    |||| ||| ||||||||||||||||||||| ||||||||| || ||||||| |||||||    
T  10758748 ccccctaactttacaaaacgttgcaaaactgctgagaagatgccacgtgtctcaaaaca 10758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 13764467 - 13764394
Alignment:
Q  318 tttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgt 392  Q
    ||||||||||||||||||||| || |||||||||    ||||||||||| ||||||||| |||||||| ||||||    
T  13764467 tttacaaaacgttgcaaaactgcttagaagacgccttatgtcccaaaac-gggggctaatatcgcaacattttgt 13764394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 53097462 - 53097414
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgc 351  Q
    ||||||||||||||||||||||||||||  ||| || ||||||||||||    
T  53097462 attttaccccttaattttacaaaacgttcaaaagctgctgagaagacgc 53097414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 16291888 - 16291943
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttccttaaaaatagaggacaaa 473  Q
    |||||||||||||||  ||||||||||||||||||||| | || ||||||| ||||    
T  16291888 atttccctaaagttagagggtcaaaagagcatatttccctgaagatagagggcaaa 16291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 460
Target Start/End: Original strand, 51291269 - 51291386
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtca 440  Q
    ||||||||||| || |||||||||| ||||| | | |||| |||||||||| ||||||| ||||   ||||||  | |||||||| | |||| |||||||    
T  51291269 tgagaagacgccacatgtcccaaaaaaggggcc-ataatcacaactttttgagaagata-aggggtcaaaagatcatatttcccttatgttagggggtca 51291366  T
Q  441 aaagagcatatttccttaaa 460  Q
    ||||| ||||||||| ||||    
T  51291367 aaagaacatatttccctaaa 51291386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 4357457 - 4357335
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| | ||||||||||| | ||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | ||||   ||||    
T  4357457 ctgagaagacgccaggtgtcccaaaaaaagggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttagaaggtc 4357361  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  4357360 aaaagagcatatttccctaaatatag 4357335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 12101333 - 12101398
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttccttaaaaatagaggacaaagttctttttt 483  Q
    ||||| |||||||||  ||||||||| ||||||||||  |||| |||||||||||| || ||||||    
T  12101333 atttctctaaagttagagggtcaaaaaagcatatttctctaaagatagaggacaaatttttttttt 12101398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 460
Target Start/End: Original strand, 19232445 - 19232560
Alignment:
Q  343 agaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaa 442  Q
    |||||| || |||||||||| || ||||| | | |||||||||||||||| ||||||  ||| |||||| || | |||| ||| | |||| || ||||||    
T  19232445 agaagatgccacgtgtcccagaaaaggggtc-ataatcgcaactttttgtaaagataaggggtaaaaaa-aacatattttccttatgttagggagtcaaa 19232542  T
Q  443 agagcatatttccttaaa 460  Q
    ||||||||||||| ||||    
T  19232543 agagcatatttccctaaa 19232560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 303 - 453
Target Start/End: Original strand, 28552377 - 28552527
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaaca-gggggctaaaatcgcaactttttgtgaagataga 401  Q
    ||||||||| ||||||||||||||||||||||| || || |||||| || ||||||| ||||| | |||||| ||||| |||||||||||| |||||  |    
T  28552377 attttaccctttaattttacaaaacgttgcaaacctgcttagaagatgccacgtgtctcaaaataggggggccaaaattgcaactttttgtaaagattaa 28552476  T
Q  402 ggg-caaaaaagaataaatttccctaaagttatggggtcaaaagagcatattt 453  Q
    ||| ||||| ||  |  |||||||||||| ||  |||| ||||||||||||||    
T  28552477 gggtcaaaagagctt--atttccctaaagatagagggttaaaagagcatattt 28552527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 24962158 - 24962036
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  24962158 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 24962062  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  24962061 aaaagagcatatttccctaaacatag 24962036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 6285237 - 6285333
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||||||||||||||||||||||||||||||||  |  ||||||||||| || |||| | ||| | ||||  ||||| |||||||||||| ||||||    
T  6285237 attttaccccttaattttacaaaacgttgcaaagttgttgagaagacgccacatgtctcgaaataaggggtcaaaattgcaactttttgtaaagata 6285333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 453
Target Start/End: Complemental strand, 1937370 - 1937219
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtg-tcccaaaacagggggctaaaatcgcaactttttgtgaagataga 401  Q
    |||||||||||||| |||||||||||||||||||||    ||||||||| | ||| ||| |||| ||||||  ||||||||||| |||||| || ||| |    
T  1937370 attttaccccttaactttacaaaacgttgcaaaactgtatagaagacgccatgtgttcctaaaatagggggtcaaaatcgcaacattttgtaaatataaa 1937271  T
Q  402 gggcaaaaaagaataaatttccctaaagttatggggtcaaaagagcatattt 453  Q
    |||   ||||||  | |||||||||||| ||| |||  |||||| |||||||    
T  1937270 gggggtaaaagatcatatttccctaaagatatagggctaaaagaacatattt 1937219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 19078024 - 19078146
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  ||||  || | |||||||| | |||| | ||||    
T  19078024 ctgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaa--aacatatttcccttatgttaggaggtc 19078120  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  19078121 aaaagagcatatttccctaaacatag 19078146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 19125914 - 19126036
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  ||||  || | |||||||| | |||| | ||||    
T  19125914 ctgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaa--aacatatttcccttatgttaggaggtc 19126010  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  19126011 aaaagagcatatttccctaaacatag 19126036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 16551742 - 16551860
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| |||||||||||||||  |||| | ||||||||||||||| ||||||| ||||   ||||||  | ||||  || | |||| ||||||    
T  16551742 ctgagaagacgccacgtgtcccaaaaca-agggccataatcgcaactttttgagaagata-aggggtcaaaagatcatatttgtctgatgttagggggtc 16551839  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  16551840 aaaagagcatatttccctaaa 16551860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 454
Target Start/End: Complemental strand, 24196466 - 24196355
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | | |||||||||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  24196466 ctgagaagacgccacgtgtcccaaaa-aaggggccatattcgcaactttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 24196370  T
Q  440 aaaagagcatatttc 454  Q
    |||||||||||||||    
T  24196369 aaaagagcatatttc 24196355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 465
Target Start/End: Complemental strand, 24750000 - 24749881
Alignment:
Q  343 agaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaa 442  Q
    ||||||||| |||||| |||||| | ||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||||| |||||||    
T  24750000 agaagacgccacgtgttccaaaaaatgggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttatgaggtcaaa 24749904  T
Q  443 agagcatatttccttaaaaatag 465  Q
    ||||||||||||| |||| ||||    
T  24749903 agagcatatttccctaaacatag 24749881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 3617004 - 3616882
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  ||||  || | |||||||| | || | | ||||    
T  3617004 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa--aacatatttcccttatgtgaagaggtc 3616908  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  3616907 aaaagagcatatttccctaaacatag 3616882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 48471962 - 48472084
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||| | | |||||||||||||||| ||||||  |||  |||||| ||  ||||| || | |||| | ||||    
T  48471962 ctgagaagacgccacgtgtcccaaaa-aagggaccataatcgcaactttttgtaaagataaggggtcaaaaagcat--atttctcttatgttaggaggtc 48472058  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  48472059 aaaagagcatatttccctaaacatag 48472084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 454
Target Start/End: Original strand, 2260470 - 2260589
Alignment:
Q  333 aaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagtta 432  Q
    |||| |||||||||||||| |||| |||||||| ||||| | | ||||||||||||||| ||||||| ||||   |||| |  | |||||||| |  |||    
T  2260470 aaaattactgagaagacgccacgtatcccaaaaaaggggtc-agaatcgcaactttttgagaagata-aggggttaaaatatcatatttcccttatatta 2260567  T
Q  433 tggggtcaaaagagcatatttc 454  Q
    ||||||||||| ||||||||||    
T  2260568 tggggtcaaaaaagcatatttc 2260589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 460
Target Start/End: Complemental strand, 9387893 - 9387780
Alignment:
Q  346 agacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatgggg-tcaaaag 444  Q
    |||||| || |||||||||||||| | | | |||||||| |||||| ||||||| ||||  |||| || || |||||||| | |||| |||| |||||||    
T  9387893 agacgccacatgtcccaaaacaggtgtc-ataatcgcaaatttttgagaagataaagggtcaaaa-gattatatttcccttatgttaggggggtcaaaag 9387796  T
Q  445 agcatatttccttaaa 460  Q
    ||||||||||||||||    
T  9387795 agcatatttccttaaa 9387780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 28920755 - 28920814
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    |||||||||||| || |||||||||| ||||||| | |||||| ||||||||| ||||||    
T  28920755 ctgagaagacgccacatgtcccaaaaaagggggccataatcgccactttttgtaaagata 28920814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 27495081 - 27495162
Alignment:
Q  318 tttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata 399  Q
    ||||||||| ||| |||| ||  || |||||| | ||||||||||||||| ||||| ||||||| ||||||| || ||||||    
T  27495081 tttacaaaatgttacaaatctggtgtgaagacaccacgtgtcccaaaacatggggccaaaatcgtaacttttggtaaagata 27495162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 19487 - 19366
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| ||||||    
T  19487 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgtta-ggggtc 19392  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  19391 aaaagagcatatttccctaaacatag 19366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 465
Target Start/End: Complemental strand, 62020 - 61897
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacag-ggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    ||||||||||| ||||||||||||| |  ||||| | ||| |||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| |  |||    
T  62020 tgagaagacgccacgtgtcccaaaaaaaaggggccataattgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggatgtc 61923  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  61922 aaaagagcatatttccctaaacatag 61897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 245799 - 245677
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  245799 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 245703  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  245702 aaaagagcatatttccctaaacatag 245677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Complemental strand, 18695208 - 18695086
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| | ||||    
T  18695208 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttaggaggtc 18695112  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  18695111 aaaagagcatatttccctaaacatag 18695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 404
Target Start/End: Complemental strand, 24025293 - 24025194
Alignment:
Q  303 attttaccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagag 402  Q
    ||||| |||||||||||||||||| |||||||| ||| ||||||||  | ||||||  ||||||||| ||| ||||| |||||||||||| |||||| ||    
T  24025293 attttgccccttaattttacaaaatgttgcaaagctaatgagaaga--ccacgtgttgcaaaacaggaggccaaaattgcaactttttgtaaagataaag 24025196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 38476569 - 38476691
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| |  |||  | ||||||||||||||| ||||||| ||||   ||||||  | |||||||| | |||||||||||    
T  38476569 ctgagaagacgccacgtgtcccaaaaaa--gggtcataatcgcaactttttgagaagata-aggggtcaaaagatcatatttcccttatgttatggggtc 38476665  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  38476666 aaaagagcatatttccctaaatatag 38476691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 16901096 - 16901218
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||| | |||||||||||||||| ||||||  |||  ||||  || | |||||||| | |||| | ||||    
T  16901096 ctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa--aacatatttcccttatgttaggaggtc 16901192  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  16901193 aaaagagcatatttccctaaacatag 16901218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 343 - 460
Target Start/End: Original strand, 17825599 - 17825713
Alignment:
Q  343 agaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaa 442  Q
    ||||||||| ||||||||||||| ||||| | | |||||||||||||||  |||||| ||||  |||| ||| | ||||| || | |||| |||||||||    
T  17825599 agaagacgccacgtgtcccaaaaaaggggcc-ataatcgcaactttttgacaagataaagggtcaaaa-gaacatatttctcttatgtta-ggggtcaaa 17825695  T
Q  443 agagcatatttccttaaa 460  Q
    ||||||||||||| ||||    
T  17825696 agagcatatttccctaaa 17825713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 40428738 - 40428855
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||| ||||||| ||||||  |||  |||||| ||  |||||||| | |||| | ||||    
T  40428738 ctgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaattttttgtaaagataaggggtcaaaaagcat--atttcccttatgttaggaggtc 40428834  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||| ||||||||| ||||    
T  40428835 aaaagaacatatttccctaaa 40428855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 36954440 - 36954538
Alignment:
Q  309 ccccttaattttacaaaacgttgcaaaactactgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaa 408  Q
    ||||||||||| ||||||| ||||||| ||| |||||||| |  ||||||||||||||| | | | ||||| |||||||||||| |||||| |||| |||    
T  36954440 ccccttaattt-acaaaacattgcaaagctaatgagaagaggtcacgtgtcccaaaaca-gtgaccaaaattgcaactttttgtaaagataaagggtaaa 36954537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 24025149 - 24025094
Alignment:
Q  418 atttccctaaagttatggggtcaaaagagcatatttccttaaaaatagaggacaaa 473  Q
    |||||| ||||||||  ||||||||||||||||||||| |||| ||||||| ||||    
T  24025149 atttccgtaaagttagagggtcaaaagagcatatttccctaaagatagagggcaaa 24025094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 460
Target Start/End: Original strand, 41663625 - 41663740
Alignment:
Q  343 agaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagag-ggcaaaaaagaataaatttccctaaagttatggggtcaa 441  Q
    |||||| || ||||||||||||| | ||||| | |||||||| |||||| ||| ||| || | |||||||  ||  |||||||| | |||||||||||||    
T  41663625 agaagatgccacgtgtcccaaaa-aaggggccataatcgcaattttttgagaaaataaagagtcaaaaaatcat--atttcccttatgttatggggtcaa 41663721  T
Q  442 aagagcatatttccttaaa 460  Q
    |||||||||||||| ||||    
T  41663722 aagagcatatttccctaaa 41663740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 455
Target Start/End: Complemental strand, 2196 - 2084
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| | ||||||| |||||||||||||||| ||||||  |||  |||||| ||   ||||||| | |||| | ||||    
T  2196 ctgagaagacgccacgtgtcccaaaa-aaggggctataatcgcaactttttgtaaagatatggggtcaaaaagcat--gtttcccttatgttaggaggtc 2100  T
Q  440 aaaagagcatatttcc 455  Q
    ||||||||||||||||    
T  2099 aaaagagcatatttcc 2084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 2148 - 2270
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||||||||||||||| ||||||  |||  |||||| ||  ||| |||| | |||| | ||||    
T  2148 ctgagaagacgccacgtgtcccaaaaaaggggtc-ataatcgcaactttttgtaaagataaggggtcaaaaagcat--attgcccttatgttaggaggtc 2244  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  2245 aaaagagcatatttccctaaacatag 2270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 460
Target Start/End: Original strand, 3667 - 3784
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||| |  |||||||||||| ||||| ||| ||||| |||||||||| ||||||  |||  |||||| |||  ||||||| | |||| ||||||    
T  3667 ctgagaagacacctcgtgtcccaaaaaagggg-ctataatcgaaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttagggggtc 3763  T
Q  440 aaaagagcatatttccttaaa 460  Q
    |||||||||||||||| ||||    
T  3764 aaaagagcatatttccctaaa 3784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 25063 - 25185
Alignment:
Q  340 ctgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    |||||||||||| ||||||||||||| ||||| | | |||| ||||||||  | ||||||  |||  |||||| |||  ||||||| | |||| ||||||    
T  25063 ctgagaagacgccacgtgtcccaaaaaaggggcc-ataatcacaacttttgttaaagataaggggtcaaaaagcata--tttcccttatgttagggggtc 25159  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  25160 aaaagagcatatttccctaaacatag 25185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 465
Target Start/End: Original strand, 142049 - 142168
Alignment:
Q  343 agaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata-gagggcaaaaaagaataaatttccctaaagttatggggtcaa 441  Q
    ||||||||| ||||||||||||| | ||| | | |||||||||||||||| |||||| |||| |||||| | |||  ||||||| | |||| | ||||||    
T  142049 agaagacgccacgtgtcccaaaaaatgggcc-ataatcgcaactttttgtaaagataagaggtcaaaaa-gcata--tttcccttatgttaggaggtcaa 142144  T
Q  442 aagagcatatttccttaaaaatag 465  Q
    |||||||||||||| |||| ||||    
T  142145 aagagcatatttccctaaacatag 142168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 465
Target Start/End: Original strand, 3060 - 3181
Alignment:
Q  341 tgagaagacgctacgtgtcccaaaacagggggctaaaatcgcaactttttgtgaagata-gagggcaaaaaagaataaatttccctaaagttatggggtc 439  Q
    ||||||||||| ||||||||||||| || || | | ||| |||||||||||| |||||| |||| ||||||| |    |||||||| | |||| | ||||    
T  3060 tgagaagacgccacgtgtcccaaaaaagaggcc-ataattgcaactttttgtaaagataagaggtcaaaaaacat---atttcccttatgttaggaggtc 3155  T
Q  440 aaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| |||| ||||    
T  3156 aaaagagcatatttccctaaacatag 3181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 15751 - 15712
Alignment:
Q  241 tgtatttgtgaccctttaacttttaaaaagttgcgatttt 280  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  15751 tgtatttgtgaccccttaacttttaaaaagttgcaatttt 15712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1202 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1202
Description:

Target: scaffold1202; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 465
Target Start/End: Original strand, 1909 - 1995
Alignment:
Q  377 aatcgcaactttttgtgaagatagagggcaaaaaagaataaatttccctaaagttatggggtcaaaagagcatatttccttaaaaatag 465  Q
    |||||||||||||||| ||||||  |||  |||||| |||  ||||||| | |||| |||||||||| ||||||||||| |||| ||||    
T  1909 aatcgcaactttttgtaaagataaggggtcaaaaagcata--tttcccttatgttagggggtcaaaatagcatatttccctaaacatag 1995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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