View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2491_low_17 (Length: 224)
Name: NF2491_low_17
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2491_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 36606510 - 36606318
Alignment:
| Q |
17 |
cataggttaaggtcacatgataaatcattatcaatgagtatgactggtcaggtcatctcaaatcactacatgtggctagcattctccatgctcgtgttat |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
36606510 |
cataagttaaggtcacatgataaatcattattaatgagtatgactggtcaggtcatctcaaatcactacatgtggttagcattctccatgctcctgttat |
36606411 |
T |
|
| Q |
117 |
atacctacttttgcttcatggccaaaatgatctctacaatacataccttcacattataagtgttttatatcaagcatggataatgtcatttgt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36606410 |
atacctacttttgcttcatggccaaaatgatctatacaatacataccttcacattataagtgttttatatcaagcatggagaatgtcatttgt |
36606318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 27539604 - 27539738
Alignment:
| Q |
79 |
tcactacatgtggctagcattctccatgctcgtgttatatacctacttttgcttcatggccaaaatgatctctacaatacataccttcacattataagtg |
178 |
Q |
| |
|
||||||||||||| |||||||| | |||||| || |||| ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
27539604 |
tcactacatgtggttagcattcactatgctcttgctata--cctacttttgcttcacaaccaatatgatctctacgatacataccttcacatcataagtg |
27539701 |
T |
|
| Q |
179 |
tt------ttatatcaagcatggataatgtcatttgt |
209 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||| |
|
|
| T |
27539702 |
ttttataattatatcaagcatagataatgtcatttgt |
27539738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University