View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2491_low_18 (Length: 223)
Name: NF2491_low_18
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2491_low_18 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 926465 - 926250
Alignment:
| Q |
15 |
tcactttcttgcttgatcccaacttcgacctttcttccgtgcaacttccnnnnnnncatctccatgactttat----aaatagcctaaaaataaacactt |
110 |
Q |
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| T |
926465 |
tcactttcttgcttgatcccaacttcgacctttcttccgtgcaacttcctttttttcatctccatgactttatttataaatagcctaaaaataaacactt |
926366 |
T |
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| Q |
111 |
gttgaatgcatccaaataaactcataaaagaaacacaagttatggaagaaacctttatttcctccaaaccatgtgccaaag---aagagatcatcgattt |
207 |
Q |
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| T |
926365 |
gttgaatgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgccaaagaagaagagatcatcgattt |
926266 |
T |
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| Q |
208 |
gaaccaaatcacactc |
223 |
Q |
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| T |
926265 |
gaaccaaatcacactc |
926250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 928641 - 928570
Alignment:
| Q |
152 |
atggaagaaacctttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactc |
223 |
Q |
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| T |
928641 |
atggaggaaacttttatttcttcaaaaccatgtggcaaagaagaaatcattgatttgaaccaaatcacactc |
928570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 939569 - 939495
Alignment:
| Q |
149 |
gttatggaagaaacctttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactc |
223 |
Q |
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| T |
939569 |
gttatggaggaaacttttatttcttccaaaccaagtggcaatgaacaaagcattgatttgaaccaaatcacactc |
939495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 935740 - 935703
Alignment:
| Q |
186 |
ccaaagaagagatcatcgatttgaaccaaatcacactc |
223 |
Q |
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| T |
935740 |
ccaaagaagagatcattgatttgaaccaaatcacactc |
935703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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