View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2491_low_3 (Length: 532)
Name: NF2491_low_3
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2491_low_3 |
 | |
|
| [»] scaffold0466 (3 HSPs) |
| | |
|
| [»] scaffold1041 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 25495357 - 25494845
Alignment:
| Q |
1 |
gaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495357 |
gaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtg |
25495258 |
T |
|
| Q |
101 |
aaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatgactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495257 |
aaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatgactc |
25495158 |
T |
|
| Q |
201 |
gaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495157 |
gaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgt |
25495058 |
T |
|
| Q |
301 |
gaaaaacaccacaagagctagacgataagaaagccaaaccagacgagaagagctagaaagaatagaaaagaatagaacacataaactcatgaaagtgtgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25495057 |
gaaaaacaccacaagagctagacgataagaaagccaaaccagacgagaagagctagaaagaatagaaaagaatagaacacataaactcatgaaagtgtgc |
25494958 |
T |
|
| Q |
401 |
aatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatttagtatttttcgcaagtcgctcatcaaattaccataaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494957 |
aatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatttagtatttttcgcaagtcgctcatcaaattaccataaga |
25494858 |
T |
|
| Q |
501 |
atagtaatctcac |
513 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25494857 |
atagtaatctcac |
25494845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 56 - 316
Target Start/End: Complemental strand, 25618388 - 25618150
Alignment:
| Q |
56 |
taccgaggatatgaattaacttctaaagagtttcaagagtttgtgaaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaac |
155 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25618388 |
taccgaggatatgaattaatttctaaagagtttcaagagtttgtgaaagagaattgaattaggcttcaactaacaaaacaaaacaaattatg-------- |
25618297 |
T |
|
| Q |
156 |
catgatttttaggaaggaaaattagaacaattcttgatatgactcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtgg |
255 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25618296 |
-------------aaggaaaattagaacaattgttgatatggctcgaatcatgctccaaagtaagaaactaccaaaataattgtgggttt-aagttgtgg |
25618211 |
T |
|
| Q |
256 |
cgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25618210 |
cgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaaga |
25618150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 140 - 316
Target Start/End: Complemental strand, 25651055 - 25650875
Alignment:
| Q |
140 |
aaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatgact-----cgaatcatgctcaaaagtaagaaactaccaaaata |
234 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25651055 |
aaattatggttcgaaccatgctttgtaggaaggaaaattagaacaattcttgatatggcttggctcgaatcatgctcaaaagtaagaaactaccaaaata |
25650956 |
T |
|
| Q |
235 |
attgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
25650955 |
attgtggg-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaaga |
25650875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 25651306 - 25651165
Alignment:
| Q |
1 |
gaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25651306 |
gaataacaaaggtactatcgagagaaccagcttgcagataaaagctatatggacgtaccgaagatgtgaattaacttctaaagagtttcaagagtttgtg |
25651207 |
T |
|
| Q |
101 |
aaagagaattgaattaggcttcaactaacaaaacataacaaa |
142 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25651206 |
aaagataattgaattaggcttcaactaacaaaacagaacaaa |
25651165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 391 - 513
Target Start/End: Complemental strand, 25391874 - 25391752
Alignment:
| Q |
391 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatttagtatttttcgcaagtcgctcatcaaat |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
25391874 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacacttgaaagattgattgaaatatagtatttttcgcaagtctctcatcaaaa |
25391775 |
T |
|
| Q |
491 |
taccataagaatagtaatctcac |
513 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
25391774 |
taccgtaagaatagtactctcac |
25391752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 391 - 513
Target Start/End: Complemental strand, 25617752 - 25617622
Alignment:
| Q |
391 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacac-------tgaaaagattgattgaaatttagtatttttcgcaagtcgctc |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
25617752 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaagtctgaaaagattgattgaaatatagtattttttgcaagtcgctc |
25617653 |
T |
|
| Q |
484 |
atcaaa-ttaccataagaatagtaatctcac |
513 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||| |
|
|
| T |
25617652 |
atcaaatttaccgtaagaatagtactctcac |
25617622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 25359199 - 25359106
Alignment:
| Q |
222 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
316 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
25359199 |
aactaccaaaataattgttgg-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaaga |
25359106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 25399232 - 25399139
Alignment:
| Q |
222 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
316 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
25399232 |
aactaccaaaataattattgg-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaaga |
25399139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 25359256 - 25359196
Alignment:
| Q |
20 |
gagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359256 |
gagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
25359196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 25399289 - 25399229
Alignment:
| Q |
20 |
gagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399289 |
gagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
25399229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 25359046 - 25359006
Alignment:
| Q |
319 |
tagacgataagaaagccaaaccagacgagaagagctagaaa |
359 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
25359046 |
tagacgataagaaagccaaacttgacgacaagagctagaaa |
25359006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 25618090 - 25618050
Alignment:
| Q |
319 |
tagacgataagaaagccaaaccagacgagaagagctagaaa |
359 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
25618090 |
tagacgataagaaagccaaacttgacgacaagagctagaaa |
25618050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 2 - 316
Target Start/End: Original strand, 5996 - 6314
Alignment:
| Q |
2 |
aataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtga |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtga |
6095 |
T |
|
| Q |
102 |
aagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgata-----tg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6096 |
aagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatggcttg |
6195 |
T |
|
| Q |
197 |
actcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6196 |
gctcgaatcatgctcaaaagtaagaaactaccaaaataattgt-gggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagt |
6294 |
T |
|
| Q |
297 |
gtgtgaaaaacaccacaaga |
316 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6295 |
gtgtgaaaaacaccacaaga |
6314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 400 - 513
Target Start/End: Original strand, 7955 - 8068
Alignment:
| Q |
400 |
caatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatttagtatttttcgcaagtcgctcatcaaattaccataag |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
7955 |
caatgaaggacacaaggaaagaatagttgcaaaaggctaagctgaaaatattgattgaaatatagtatttttcgcaagtcactcatcaaaataccataag |
8054 |
T |
|
| Q |
500 |
aatagtaatctcac |
513 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
8055 |
aatagtactctcac |
8068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 6374 - 6414
Alignment:
| Q |
319 |
tagacgataagaaagccaaaccagacgagaagagctagaaa |
359 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
6374 |
tagacgataagaaagccaaacttgacgacaagagctagaaa |
6414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 351 - 549
Alignment:
| Q |
1 |
gaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtg |
100 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
351 |
gaataacaaagctattatggagagaaccagcttgcagataaaagctatatggacgtaccgaggatatggattaacttctaaagagtttc---------tg |
441 |
T |
|
| Q |
101 |
aaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatgactc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
442 |
aaagagaattgaattaggcttcaactaacaaaacagaacaaattatggtccgaaccattctttttaggaaggaaaattagaacaattcttgatatggctc |
541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 391 - 513
Target Start/End: Original strand, 870 - 992
Alignment:
| Q |
391 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatttagtatttttcgcaagtcgctcatcaaat |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
870 |
gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaaa |
969 |
T |
|
| Q |
491 |
taccataagaatagtaatctcac |
513 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
970 |
taccgtaagaatagtactctcac |
992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 15673539 - 15673487
Alignment:
| Q |
180 |
gaacaattcttgatatgactcgaatcatgctcaaaagtaagaaactaccaaaa |
232 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
15673539 |
gaacaatacttgatatggctcgaagcatgctcaaaagtaagaatctaccaaaa |
15673487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 32973413 - 32973519
Alignment:
| Q |
192 |
atatgactcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaa |
291 |
Q |
| |
|
||||| |||||| | || |||||| ||||||||||||||| |||| |||| ||||||||||| | |||| |||| | || |||||||||||||||||| |
|
|
| T |
32973413 |
atatggctcgaagcttggtcaaaatcaagaaactaccaaaagaattttggg-ttgaagttgtgacatgtgcagtctatctatctaatagatctccaacaa |
32973511 |
T |
|
| Q |
292 |
taagtgtg |
299 |
Q |
| |
|
||||||| |
|
|
| T |
32973512 |
gaagtgtg |
32973519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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