View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2491_low_5 (Length: 398)
Name: NF2491_low_5
Description: NF2491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2491_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 1160399 - 1160712
Alignment:
| Q |
18 |
cctcaatatttccatttccatctaagttccctataatttgaataaaacaagttatcaaaccaaaagtgtgtgaaacaatattgaaatttgtgcttgtttg |
117 |
Q |
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| T |
1160399 |
cctcaatatttccatttccatctaagttccctataatttgaataaaacaagttatcaaaccaaaagtgtgtgaaacaatattgaaatttgtgcttgtttg |
1160498 |
T |
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| Q |
118 |
aaaaggtaaataaattgtaccattaaagccttgagcttgttcattgctttgcatgcttctagcttcatctttgtttgatatggcttgagcaaatgaattg |
217 |
Q |
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| T |
1160499 |
aaaaggtaaataaattgtaccattaaagccttgagcttgttcattgctttgaatgcttctagcttcatctttgtttgatatggcttgagcacatgaattg |
1160598 |
T |
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| Q |
218 |
ataagtaggaacaagactagaaacattgaaatcttcatattcatttgatatggcttcatttgaactgtagtcattggttggtagggtaaaggggttatat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1160599 |
ataagtaggaacaagactagaaacattgaaatcttcatattcatttgatatggcttcatttgaactgtagtca----ttggtagggtaaaggggttatat |
1160694 |
T |
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| Q |
318 |
aaagactttaattgaagg |
335 |
Q |
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|||||||||||||||||| |
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| T |
1160695 |
aaagactttaattgaagg |
1160712 |
T |
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