View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2492_high_5 (Length: 408)

Name: NF2492_high_5
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2492_high_5
NF2492_high_5
[»] chr8 (12 HSPs)
chr8 (1-390)||(108048-108438)
chr8 (176-235)||(9503612-9503671)
chr8 (279-329)||(105658-105708)
chr8 (138-235)||(30857261-30857358)
chr8 (138-217)||(43932082-43932161)
chr8 (197-251)||(4079554-4079608)
chr8 (197-235)||(6590874-6590912)
chr8 (191-233)||(24052913-24052955)
chr8 (198-235)||(12966074-12966111)
chr8 (168-233)||(17800642-17800707)
chr8 (197-237)||(6649164-6649204)
chr8 (135-235)||(14578532-14578631)
[»] chr6 (8 HSPs)
chr6 (138-235)||(7055591-7055687)
chr6 (173-233)||(11073532-11073591)
chr6 (138-237)||(20703436-20703535)
chr6 (169-235)||(3846442-3846508)
chr6 (157-235)||(9758718-9758794)
chr6 (138-215)||(24985967-24986044)
chr6 (177-217)||(9692884-9692924)
chr6 (197-237)||(24252972-24253012)
[»] chr3 (12 HSPs)
chr3 (166-251)||(33068251-33068337)
chr3 (137-215)||(45799930-45800007)
chr3 (138-215)||(29398490-29398566)
chr3 (178-237)||(43597966-43598025)
chr3 (138-215)||(20512696-20512772)
chr3 (176-233)||(27161458-27161515)
chr3 (177-240)||(8380445-8380508)
chr3 (168-230)||(105388-105450)
chr3 (138-231)||(32711221-32711314)
chr3 (176-225)||(39682630-39682679)
chr3 (183-235)||(1779505-1779557)
chr3 (197-237)||(36443963-36444003)
[»] chr7 (9 HSPs)
chr7 (166-235)||(12423705-12423774)
chr7 (138-235)||(35274445-35274541)
chr7 (138-225)||(48634198-48634284)
chr7 (184-239)||(47877879-47877934)
chr7 (191-233)||(3967790-3967832)
chr7 (197-251)||(16970319-16970373)
chr7 (138-232)||(48634209-48634302)
chr7 (166-235)||(35274424-35274493)
chr7 (173-237)||(42926994-42927058)
[»] chr5 (13 HSPs)
chr5 (133-232)||(17768037-17768133)
chr5 (138-232)||(12645381-12645474)
chr5 (166-244)||(38244145-38244223)
chr5 (138-235)||(8850296-8850392)
chr5 (138-235)||(19087810-19087906)
chr5 (138-235)||(41527008-41527104)
chr5 (138-229)||(27895929-27896019)
chr5 (138-217)||(1098657-1098735)
chr5 (197-251)||(3537873-3537927)
chr5 (135-225)||(14974894-14974984)
chr5 (197-235)||(39231804-39231842)
chr5 (196-237)||(39231883-39231924)
chr5 (197-237)||(35463962-35464002)
[»] chr4 (10 HSPs)
chr4 (138-235)||(51313478-51313574)
chr4 (138-232)||(12596708-12596802)
chr4 (138-235)||(2091381-2091477)
chr4 (139-211)||(10350891-10350962)
chr4 (169-217)||(24099604-24099652)
chr4 (156-215)||(12074780-12074838)
chr4 (197-235)||(35755105-35755143)
chr4 (196-237)||(32125428-32125469)
chr4 (153-236)||(16412248-16412331)
chr4 (197-233)||(21208665-21208701)
[»] chr2 (7 HSPs)
chr2 (166-251)||(33853825-33853910)
chr2 (174-237)||(34360834-34360897)
chr2 (176-233)||(40363232-40363289)
chr2 (138-237)||(25551947-25552045)
chr2 (177-233)||(8778651-8778707)
chr2 (179-235)||(34138768-34138824)
chr2 (197-233)||(42818853-42818889)
[»] chr1 (16 HSPs)
chr1 (138-235)||(4540632-4540728)
chr1 (138-235)||(47911861-47911957)
chr1 (138-235)||(457605-457701)
chr1 (138-235)||(30412608-30412704)
chr1 (153-251)||(47084611-47084709)
chr1 (138-235)||(42074165-42074262)
chr1 (170-233)||(42915710-42915773)
chr1 (166-237)||(47911909-47911980)
chr1 (167-233)||(6340631-6340697)
chr1 (175-233)||(44673899-44673957)
chr1 (166-235)||(457584-457653)
chr1 (166-235)||(30412656-30412725)
chr1 (197-233)||(5091761-5091797)
chr1 (181-233)||(14214604-14214656)
chr1 (197-233)||(24198797-24198833)
chr1 (177-233)||(25554556-25554612)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 108438 - 108048
Alignment:
Q  1 cgtaaagacatttgatattgttaagatttaggttccaacccataatttttattttctcattatataagaagagaaatgacgcagacactctaacaatatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  108438 cgtaaagacatttaatattgttaagatttaggttccaacccataatttttattttctcagtatataagaagagaaatgatgcagacactctaacaatatt 108339  T
Q  101 actccatttggtcatatttataaacnnnnnnngtatattttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatatt 200  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  108338 actccatttggtcatatttataaacaaaaaaagtatattttagattcatttgataattaatgtattttggtctatatatagaccaaatatatcatatatt 108239  T
Q  201 caatgaacctaaaaagtaattttttgtttataaatataattggatgaagta-nnnnnnnnctttgaaggatattaatatttaaaattcaaagtcaaaata 299  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  108238 caatgaacctaaaaagtaattttttatttataaatataattggatgaagtatttttttttctttgaaggatattaatatttaaaattcaaagtcaaaata 108139  T
Q  300 ttaatgtttaaatattccttgtatactgaatgcaagttgatgttgaaagaaaaactatagtagtgtgccaaacagtgttggtatacagaaa 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  108138 ttaatgtttaaatattccttgtatactgaatgcaagttgatgttgaaagaaaaactatagtagtgtgccaaacagtgttggtatacagaaa 108048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 9503612 - 9503671
Alignment:
Q  176 atatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||||| |||||| || | |||||||||||| ||||||||| |||||||||||||||||    
T  9503612 atatagaccaaatacattaaatattcaatgaatctaaaaagttattttttgtttataaat 9503671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 105658 - 105708
Alignment:
Q  279 ttaaaattcaaagtcaaaatattaatgtttaaatattccttgtatactgaa 329  Q
    ||||||| |||||||||||||||  ||||||||||||||| ||||||||||    
T  105658 ttaaaatccaaagtcaaaatatttttgtttaaatattcctcgtatactgaa 105708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 30857261 - 30857358
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatat-atagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||  ||| ||||||||||| ||| ||||| ||| ||||||||||| |   ||||||| || |||||||||||||||||| ||||||||    
T  30857261 ttttagattcattgaatatttaatgtattt-ggtatatattatacatcaaatatattaggcattcaataaatctaaaaagtaattttttgcttataaat 30857358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 43932161 - 43932082
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagt 217  Q
    |||||||||||||  ||||||||||||| ||| | || |||||||| | ||| ||||| | | |||||||||||||||||    
T  43932161 ttttagattcattgaataattaatgtatcttgttataaatatagattagatacatcatttgtacaatgaacctaaaaagt 43932082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 4079554 - 4079608
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaatataattggatgaagta 251  Q
    ||||||||||||||||||| |  |||||||||||||||||| |  ||||||||||    
T  4079554 tattcaatgaacctaaaaaattgttttttgtttataaatatgaccggatgaagta 4079608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 6590874 - 6590912
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  6590874 tattcaatgtacctaaaaagtaattttttgcttataaat 6590912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 24052913 - 24052955
Alignment:
Q  191 atcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||| ||||||||||||||||||||||  |||||||||||||    
T  24052913 atcatttattcaatgaacctaaaaagtagatttttgtttataa 24052955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 12966111 - 12966074
Alignment:
Q  198 attcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||||||| | |||||||||||||||||    
T  12966111 attcaatgaacctaaaaaattattttttgtttataaat 12966074  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 17800707 - 17800642
Alignment:
Q  168 tggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||||||||||||||||| ||  ||||| |||| ||||||||||| |||| |  ||||||||||||    
T  17800707 tggtctatatatagatcatatgcatcatttattgaatgaacctaataagtcaacttttgtttataa 17800642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 6649164 - 6649204
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    ||||||||| ||||||||||| |||||||| ||||||||||    
T  6649164 tattcaatgtacctaaaaagtcattttttgcttataaatat 6649204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 14578532 - 14578631
Alignment:
Q  135 atattttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaa 234  Q
    ||||||||| ||||||  ||||||||||||| | | |||||||||||| |  |||||| || | ||||||||| |||||||||  | ||||| |||||||    
T  14578532 atattttaggttcattgaataattaatgtatct-gatctatatatagacccgatatattatttgttcaatgaatctaaaaagttgtattttgcttataaa 14578630  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 7055591 - 7055687
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||  ||| ||||||||||| |||| ||||||||||||||||||| || ||||||||||||||||||||||  |||||| ||||||||    
T  7055591 ttttagattcattcaatacttaatgtattt-ggtcaatatatagatcaaatatattatgtattcaatgaacctaaaaagtacatttttgcttataaat 7055687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 11073532 - 11073591
Alignment:
Q  173 tatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||||||||||||||| ||||| |||| |||||||||||||| |||||||||| ||||||    
T  11073532 tatatatagatcaaatacatcatttatttaatgaacctaaaaa-taattttttgcttataa 11073591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 20703436 - 20703535
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctata-tatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaata 236  Q
    |||||| ||||||  ||| ||||||||||| |||||||| |||||| |||||| || | |||||||||||||| |||| |||| ||||||  ||||||||    
T  20703436 ttttaggttcattgaatatttaatgtattt-ggtctataatatagaccaaatacattaaatattcaatgaaccaaaaatgtaaatttttgcatataaata 20703534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 3846508 - 3846442
Alignment:
Q  169 ggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||||||||||| ||| ||| || || |||||||||||| |||||| | |||||||| ||||||||    
T  3846508 ggtctatatataggtcatatacattatttattcaatgaacttaaaaaattattttttgcttataaat 3846442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 9758794 - 9758718
Alignment:
Q  157 ttaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||||||||| |||| |||||||||||||||| || || |||| |||||||||||||||||  | |||| ||||||||    
T  9758794 ttaatgtattt-ggtcaatatatagatcaaatacattatgtatt-aatgaacctaaaaagtacatgtttgcttataaat 9758718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 24986044 - 24985967
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctata-tatagatcaaatatatcatatattcaatgaacctaaaaa 215  Q
    |||||| |||||| ||||||| |||||| | |||||||| ||||||||||||| ||||  |||||||||||||| ||||    
T  24986044 ttttaggttcattggataattgatgtatat-ggtctataatatagatcaaatacatcagttattcaatgaacctcaaaa 24985967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 9692884 - 9692924
Alignment:
Q  177 tatagatcaaatatatcatatattcaatgaacctaaaaagt 217  Q
    |||| ||||||||||||| |||||||||||||| |||||||    
T  9692884 tataaatcaaatatatcagatattcaatgaaccaaaaaagt 9692924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 24252972 - 24253012
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    ||||||||| ||||||||||| |||||||| ||||||||||    
T  24252972 tattcaatgtacctaaaaagttattttttgcttataaatat 24253012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 33068251 - 33068337
Alignment:
Q  166 tttggtctata-tatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatataattggatgaagta 251  Q
    ||||||||||| |||||| ||||||||| | ||||||||||||  |||||| ||||||||||||||||||||| || ||||| ||||    
T  33068251 tttggtctataatatagaccaaatatattaaatattcaatgaatgtaaaaaataattttttgtttataaatatgatcggatggagta 33068337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 45799930 - 45800007
Alignment:
Q  137 attttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaa 215  Q
    ||||||||||||||| |||  |||||||||| |||||| |||||||||||||| || || ||||||||||| |||||||    
T  45799930 attttagattcattttatatctaatgtattt-ggtctacatatagatcaaatacattatgtattcaatgaatctaaaaa 45800007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 29398490 - 29398566
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaa 215  Q
    ||||||||| |||||||| ||||||||||| | |||||||||| | |||||| || || |||||||||||||||||||    
T  29398490 ttttagatttatttgatatttaatgtatttag-tctatatataaaccaaatacattatgtattcaatgaacctaaaaa 29398566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 43597966 - 43598025
Alignment:
Q  178 atagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    ||||||||||||||| |  |||||||| ||| ||||||||| ||||||||||||||||||    
T  43597966 atagatcaaatatattaggtattcaataaacttaaaaagtagttttttgtttataaatat 43598025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 20512772 - 20512696
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaa 215  Q
    ||||| ||| |||| ||| ||||||||||| |||| ||||||| ||||||||||| || |||||||||||| ||||||    
T  20512772 ttttaaatttatttaatacttaatgtattt-ggtcaatatataaatcaaatatattatgtattcaatgaacttaaaaa 20512696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 27161515 - 27161458
Alignment:
Q  176 atatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||| ||||| ||| ||||| ||||| ||||||||||||| |||||||||||||||||    
T  27161515 atatggatcacatacatcatttattctatgaacctaaaaaataattttttgtttataa 27161458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 8380508 - 8380445
Alignment:
Q  177 tatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatataat 240  Q
    |||||||||||||||| |  |||||||| |||||||||| | || ||||| |||||||||||||    
T  8380508 tatagatcaaatatattaattattcaataaacctaaaaaattatgttttgcttataaatataat 8380445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 105450 - 105388
Alignment:
Q  168 tggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgttta 230  Q
    |||||||||||| | ||| ||| ||||| ||||||||||| ||||||||| | ||||||||||    
T  105450 tggtctatatatggttcacatacatcatttattcaatgaatctaaaaagtgaatttttgttta 105388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 32711314 - 32711221
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctata-tatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttat 231  Q
    |||||||||||||  |||||| |||||| | |||||||| |||||  |||||| ||||  ||||||||||||||||||||| | |||||| ||||    
T  32711314 ttttagattcattgaataattgatgtatct-ggtctataatataggccaaatacatcaattattcaatgaacctaaaaagtgactttttgcttat 32711221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 39682679 - 39682630
Alignment:
Q  176 atatagatcaaatatatcatatattcaatgaacctaaaaagtaatttttt 225  Q
    ||||||| || ||| ||||| ||||||||||||||||||| |||||||||    
T  39682679 atatagaccacatacatcatttattcaatgaacctaaaaaataatttttt 39682630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 1779557 - 1779505
Alignment:
Q  183 tcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||||| ||||  ||||||||| ||||||||||| || ||||||||||||||    
T  1779557 tcaaatacatcaattattcaatgtacctaaaaagttatgttttgtttataaat 1779505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 36443963 - 36444003
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  36443963 tattcaatgaacctaaaaataaattttttgcttataaatat 36444003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 12423705 - 12423774
Alignment:
Q  166 tttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||||| ||||||| || || ||||||||||||||||||||||  |||||| ||||||||    
T  12423705 tttggtctatatataggtcaaatacattatgtattcaatgaacctaaaaagtacatttttgcttataaat 12423774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 35274445 - 35274541
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||| ||||||||  ||| ||||||||||| |||| ||||||||| |||||| || || |||||||||||||||||||||   |||||| ||||||||    
T  35274445 tttttgattcattcaatatttaatgtattt-ggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgcttataaat 35274541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 48634284 - 48634198
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaatttttt 225  Q
    |||||||||||||  ||| |||||||||||   |||||||||||| |||||| || || ||||||||||| |||||||||| ||||||    
T  48634284 ttttagattcattcaatatttaatgtatttaa-tctatatatagaccaaatacattatgtattcaatgaatctaaaaagtattttttt 48634198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 47877934 - 47877879
Alignment:
Q  184 caaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatataa 239  Q
    ||||||||| || |||||||| ||| |||||||||  |||||||||||||||||||    
T  47877934 caaatatattatgtattcaataaacttaaaaagtacatttttgtttataaatataa 47877879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 3967790 - 3967832
Alignment:
Q  191 atcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||    
T  3967790 atcatttattcaatgaacctaaaaagtagttttttgcttataa 3967832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 16970319 - 16970373
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaatataattggatgaagta 251  Q
    |||||||||||| ||||||||| ||||| |||||||||||| || |||| |||||    
T  16970319 tattcaatgaacttaaaaagtagtttttagtttataaatatgatcggattaagta 16970373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 48634209 - 48634302
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttata 232  Q
    |||||||||||||  |||  |||||||||| ||||||||||||||| ||||| || | ||||| |||||| |||||||  | ||||||| |||||    
T  48634209 ttttagattcattgaatacataatgtattt-ggtctatatatagattaaatacattaaatattgaatgaatctaaaaatcatttttttgcttata 48634302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 35274493 - 35274424
Alignment:
Q  166 tttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||| || |||||| || | ||||| |||||| | ||||||| |||||||| ||||||||    
T  35274493 tttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaagtgattttttgcttataaat 35274424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 42927058 - 42926994
Alignment:
Q  173 tatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    ||||||||||||||||| || |  ||||||||||| |||| ||||   |||||||||||||||||    
T  42927058 tatatatagatcaaatacattagttattcaatgaatctaagaagttgatttttgtttataaatat 42926994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 17768037 - 17768133
Alignment:
Q  133 gtatattttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttata 232  Q
    |||| |||||||||||||  ||| ||||||||||| |   |||||||||| |||||| || || ||||||||||||||||||| |||||||||| |||||    
T  17768037 gtattttttagattcattcaatatttaatgtatttgg---tatatatagaccaaatacattatgtattcaatgaacctaaaaaataattttttgcttata 17768133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 12645381 - 12645474
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttata 232  Q
    |||||||||||||  ||| ||||||||||  ||| |||||||||| |||||| || || |||||||||||| ||||||||| ||||||| |||||    
T  12645381 ttttagattcattcaatatttaatgtattc-ggtttatatatagaccaaatacattatgtattcaatgaacttaaaaagtatttttttgcttata 12645474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 38244145 - 38244223
Alignment:
Q  166 tttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatataattgga 244  Q
    ||||| |||||||||||||||||| || | || ||||||||| |||||||| | | |||||||||||||||| ||||||    
T  38244145 tttggactatatatagatcaaatacattagatgttcaatgaatctaaaaagcactcttttgtttataaatatgattgga 38244223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 8850296 - 8850392
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||| ||||||||  ||| ||||||||||| |||| ||||||||| |||||| || || ||||||||||||||||||||||  |||||  ||||||||    
T  8850296 tttttgattcattcaatatttaatgtattt-ggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaagtacatttttacttataaat 8850392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 19087810 - 19087906
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||| |||||||  ||| ||||||||||| | || ||||||||| |||||| || || ||||||||||||||||||||||  |||||| ||||||||    
T  19087810 ttttatattcattgaatacttaatgtattt-gttcaatatatagaccaaatacattatgtattcaatgaacctaaaaagtacatttttgcttataaat 19087906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 41527008 - 41527104
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||  ||| ||||||||||| |||| ||| ||| | ||||||||| ||||||||||||||| || ||||||  |||||| ||||||||    
T  41527008 ttttagattcattcaatacttaatgtattt-ggtcaatagatacaccaaatatattatatattcaatgaacttataaagtacatttttgcttataaat 41527104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 27895929 - 27896019
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgttt 229  Q
    |||||||||||||| |||| | |||||| | | ||||||||||| ||| ||| ||||| |||| |||||||||||||||| | |||||||||    
T  27895929 ttttagattcatttaataaatgatgtatgtag-tctatatataggtcacatacatcatttattaaatgaacctaaaaagttaatttttgttt 27896019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 1098735 - 1098657
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagt 217  Q
    |||||||||||||| |||| |||||||| | | |||||||||||| || ||| ||||| |||| |||||| |||||||||    
T  1098735 ttttagattcatttaataaataatgtatgtag-tctatatatagaccacatacatcatttattgaatgaatctaaaaagt 1098657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 3537873 - 3537927
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaatataattggatgaagta 251  Q
    ||||||||||||| ||||| ||| |||||| |||||||||| | |||||||||||    
T  3537873 tattcaatgaacccaaaaaataactttttgcttataaatatgactggatgaagta 3537927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 14974984 - 14974894
Alignment:
Q  135 atattttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaatttttt 225  Q
    |||||||||||| |||  ||||||||||||||  |   ||| |||||||||||||||| |  |||| |||||| ||||||||| |||||||    
T  14974984 atattttagatttattatataattaatgtattcagtcatatttatagatcaaatatattagttatttaatgaatctaaaaagtgatttttt 14974894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 39231842 - 39231804
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  39231842 tattcaatgaaccttaaaagtaattttttatttataaat 39231804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 39231883 - 39231924
Alignment:
Q  196 atattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    ||||| |||||||||||||| || ||||||||||||||||||    
T  39231883 atattaaatgaacctaaaaaatagttttttgtttataaatat 39231924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 35464002 - 35463962
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    ||||||||||||||||||| | |||||||| ||||||||||    
T  35464002 tattcaatgaacctaaaaaattattttttgcttataaatat 35463962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 51313574 - 51313478
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||  ||| ||||||||||| |||| |||||||||  ||||| || || ||||||||||| ||||||||||  |||||||||||||||    
T  51313574 ttttagattcattcaatacttaatgtattt-ggtcaatatatagactaaatacattatgtattcaatgaagctaaaaagtacatttttgtttataaat 51313478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 12596708 - 12596802
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctat-atatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttata 232  Q
    ||||| |||||||| |||| |||||||| | || |||| | ||||| || ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  12596708 ttttaaattcatttaataaataatgtatgt-ggactattaaatagaccacatatatcatttattgaatgaacctaaaaagtaaatttttgtttata 12596802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 2091381 - 2091477
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||| |||||||  ||| ||||||||||| |||| ||| ||||| |||||| || || |||||||| |||||||||| ||  |||||||||||||||    
T  2091381 ttttaaattcattcaatacttaatgtattt-ggtcaataaatagaccaaatacattatgtattcaattaacctaaaaaatatatttttgtttataaat 2091477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 10350962 - 10350891
Alignment:
Q  139 tttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaaccta 211  Q
    ||||||||||||| |||| |||||||||| ||||| |||||| | |||||| || || |||||||||||||||    
T  10350962 tttagattcatttaataactaatgtattt-ggtctttatatacaccaaatacattatctattcaatgaaccta 10350891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 24099604 - 24099652
Alignment:
Q  169 ggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagt 217  Q
    ||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  24099604 ggtctatatataggtcaaatatattatttattcgatgaacctaaaaagt 24099652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 12074780 - 12074838
Alignment:
Q  156 attaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaa 215  Q
    |||||||||||| |||||||||||||| ||||||||| | ||||  ||||||||||||||    
T  12074780 attaatgtattt-ggtctatatatagaccaaatatattaaatatcgaatgaacctaaaaa 12074838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 35755105 - 35755143
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||| || |||||||||||||||||||||||    
T  35755105 tattcaatgaacatataaagtaattttttgtttataaat 35755143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 32125428 - 32125469
Alignment:
Q  196 atattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    |||||||||||||||||||||||  |||||| ||||||||||    
T  32125428 atattcaatgaacctaaaaagtagatttttgcttataaatat 32125469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 16412331 - 16412248
Alignment:
Q  153 ataattaatgtattttggtctatata-tagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaata 236  Q
    |||| |||||||||| |||||||||  |||| |||||||||||  ||||||||||| ||||||||| | |||||  |||||||||    
T  16412331 ataaataatgtattt-ggtctatattctagaccaaatatatcaattattcaatgaatctaaaaagtcaattttttcttataaata 16412248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 21208665 - 21208701
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  21208665 tattcaatgaacctaaaaaataattttttgcttataa 21208701  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 33853910 - 33853825
Alignment:
Q  166 tttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatataattggatgaagta 251  Q
    ||||||| ||||||| | |||||| || || ||||||||||||||||||||||  ||||||||||||||||| |  ||||||||||    
T  33853910 tttggtcaatatataaaccaaatacattatgtattcaatgaacctaaaaagtacatttttgtttataaatatgaccggatgaagta 33853825  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 34360834 - 34360897
Alignment:
Q  174 atatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||  |||||  ||||||||||    
T  34360834 atatatagatcaaatacattgtatattcaatgaacctaaaaagtacatttttacttataaatat 34360897  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 40363289 - 40363232
Alignment:
Q  176 atatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||||||||  || ||||| |||||||||||||||||||||| ||||||| ||||||    
T  40363289 atatagatcacgtacatcatttattcaatgaacctaaaaagtagttttttgcttataa 40363232  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 25551947 - 25552045
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    |||||||||||||  ||| ||||||||||| | || ||||||| || ||||| || || |||||||||||| || ||| ||  |||||||||||||||||    
T  25551947 ttttagattcattcaatacttaatgtattt-gctcaatatataaataaaatacattatgtattcaatgaacttacaaaatacatttttgtttataaatat 25552045  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 8778651 - 8778707
Alignment:
Q  177 tatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||||| || ||||||||| | || |||||| |||||||||||||||||| ||||||    
T  8778651 tatagaccatatatatcatttttttaatgaatctaaaaagtaattttttgcttataa 8778707  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 34138768 - 34138824
Alignment:
Q  179 tagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||| ||||||||||  |||||||| |||||||||| |  ||||||||||||||||    
T  34138768 tagatgaaatatatcaattattcaataaacctaaaaaattgttttttgtttataaat 34138824  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 42818889 - 42818853
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||||||||||| |||||||| |||||||||||||||    
T  42818889 tattcaatgaacttaaaaagtgattttttgtttataa 42818853  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 4540728 - 4540632
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||  ||| ||||||||||| |||| ||||||||| | |||| || |||||||||||||||||| ||||||  |||||| ||||||||    
T  4540728 ttttagattcattcaatacttaatgtattt-ggtcaatatatagaccgaatacattatatattcaatgaacctataaagtacatttttgcttataaat 4540632  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 47911957 - 47911861
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||| ||||||||  ||| ||||||||||| |||| ||||||||| |||||| || || |||||||||||||||||||||   |||||||||||||||    
T  47911957 tttttgattcattcaatatttaatgtattt-ggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgtttataaat 47911861  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 457605 - 457701
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||| ||||||||  ||| ||||||||||| |||| ||||||||| |||||| || || |||||||||||||||||||||   |||||| ||||||||    
T  457605 tttttgattcattcaatatttaatgtattt-ggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgcttataaat 457701  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 30412704 - 30412608
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||| ||||||||  ||| ||||||||||| |||| ||||||||| |||||| || || |||||||||||||||||||||   |||||| ||||||||    
T  30412704 tttttgattcattcaatatttaatgtattt-ggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaagtgcatttttgcttataaat 30412608  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 47084611 - 47084709
Alignment:
Q  153 ataattaatgtattttggtc-tatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatataattggatgaagta 251  Q
    |||||||||||| ||||||| ||| ||||||||||||| || |  ||||| ||||||||||||| | || |||||||||||||| |||| ||| ||||||    
T  47084611 ataattaatgta-tttggtcatatttatagatcaaatacattagttattctatgaacctaaaaaattatgttttgtttataaatgtaatcggaagaagta 47084709  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 42074165 - 42074262
Alignment:
Q  138 ttttagattcatttgataattaatgtattttggtctatata-tagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    ||||| ||||||| |||| ||||||||||| ||| |||||| |||| ||||||||| |   |||||||||||||||||| || ||||||| ||||||||    
T  42074165 ttttaaattcattggatacttaatgtattt-ggtatatataatagaccaaatatattaggcattcaatgaacctaaaaaatagttttttgcttataaat 42074262  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 42915710 - 42915773
Alignment:
Q  170 gtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||||||||||| || ||||||||| |||| ||||||| ||||||||  ||||||| ||||||    
T  42915710 gtctatatatagaccacatatatcatttatttaatgaacttaaaaagtgtttttttgcttataa 42915773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 47911909 - 47911980
Alignment:
Q  166 tttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaatat 237  Q
    |||||||||||||| || |||||| || | ||||| |||||| | ||||||| |||||||| ||||||||||    
T  47911909 tttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaagtgattttttgcttataaatat 47911980  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 6340631 - 6340697
Alignment:
Q  167 ttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||| |||||||| | || ||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  6340631 ttggtttatatataaaccacatatatcatttattgaatgaacctaaaaagttaatttttgcttataa 6340697  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 44673957 - 44673899
Alignment:
Q  175 tatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||||||| || ||||||||| |||| ||| |||||||||| ||| |||||||||||||    
T  44673957 tatatagaccacatatatcatttattaaataaacctaaaaaataaatttttgtttataa 44673899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 457653 - 457584
Alignment:
Q  166 tttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||| || |||||| || | ||||| |||||| | ||||||| |||||||| ||||||||    
T  457653 tttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaagtgattttttgcttataaat 457584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 30412656 - 30412725
Alignment:
Q  166 tttggtctatatatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataaat 235  Q
    |||||||||||||| || |||||| || | ||||| |||||| | ||||||| |||||||| ||||||||    
T  30412656 tttggtctatatattgaccaaatacattaaatattgaatgaatcaaaaaagtgattttttgcttataaat 30412725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 5091761 - 5091797
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  5091761 tattcaatgaacctaaaaggtagttttttgtttataa 5091797  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 14214604 - 14214656
Alignment:
Q  181 gatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    ||||| ||| ||||| |||| |||||||||||||||||| |||||| ||||||    
T  14214604 gatcacatacatcatttattgaatgaacctaaaaagtaagtttttgcttataa 14214656  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 24198797 - 24198833
Alignment:
Q  197 tattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||| |||||||||||||||||| |||||||||||||    
T  24198797 tattgaatgaacctaaaaagtaaatttttgtttataa 24198833  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 25554612 - 25554556
Alignment:
Q  177 tatagatcaaatatatcatatattcaatgaacctaaaaagtaattttttgtttataa 233  Q
    |||| |||| ||| ||||| ||||||||||| ||||||||| |||||||| ||||||    
T  25554612 tatatatcacatacatcatttattcaatgaatctaaaaagttattttttgcttataa 25554556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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