View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_12 (Length: 337)
Name: NF2492_low_12
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 20524747 - 20525064
Alignment:
| Q |
17 |
tttgtacttttgagttttgatagaaaaggggaaaaaa-tggcataagaggagtgagctggaagtaagctttcctgattatagtcgtttttcatgagcggc |
115 |
Q |
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| T |
20524747 |
tttgtacttttgagttttgatagaaaagggaaaaaaaatggcataggaggagtgagctggaagtaagctttcctgattatagtcgtttcttatgagtggc |
20524846 |
T |
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| Q |
116 |
cattaactaccgctgaggtagcggcatttaactttcgccggttaaccagcag-agttaactgccgttagggtaattacagtaatttcttggtgtccgtga |
214 |
Q |
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| T |
20524847 |
agttaattatcgctgaggtagcggcatttaactttcgccgattaatcagcggcagttaactgccgatagggtcattacagtaatttcttggtgtcagtga |
20524946 |
T |
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| Q |
215 |
acaattttgtgtatgagatagcaattttcttcctacgtatctgagataaagctgatttggcccaaaccttgtaaaatatatcacgttaacgcaatgtctg |
314 |
Q |
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| T |
20524947 |
acaatttagtgtatgagatagcaattttcttcctatgtatctgagataaagc-----tggcccaaaccttgtcaaatatatcatgttagcgtagtgtccg |
20525041 |
T |
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| Q |
315 |
atccatatatggacattcgaccc |
337 |
Q |
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| T |
20525042 |
atccatatatggacattcgaccc |
20525064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 337
Target Start/End: Original strand, 20525077 - 20525169
Alignment:
| Q |
245 |
tcctacgtatctgagataaagctgatttggcccaaaccttgtaaaatatatcacgttaacgcaatgtctgatccatatatggacattcgaccc |
337 |
Q |
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| T |
20525077 |
tcctatgtatatgagataaagctaatttggcccaaaccttgtcaaatatatcatgttagcgtagtgtccgattcatatatggacattcgaccc |
20525169 |
T |
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