View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2492_low_14 (Length: 300)

Name: NF2492_low_14
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2492_low_14
NF2492_low_14
[»] chr3 (36 HSPs)
chr3 (79-291)||(2207111-2207323)
chr3 (78-292)||(29350811-29351025)
chr3 (129-291)||(3656591-3656753)
chr3 (201-291)||(20520528-20520618)
chr3 (202-291)||(7570651-7570740)
chr3 (202-291)||(23660899-23660988)
chr3 (202-291)||(23665558-23665647)
chr3 (202-291)||(24037806-24037895)
chr3 (202-290)||(27709504-27709592)
chr3 (202-291)||(757799-757888)
chr3 (202-291)||(3419560-3419649)
chr3 (202-291)||(46964583-46964672)
chr3 (202-290)||(55326350-55326438)
chr3 (201-291)||(12965321-12965411)
chr3 (3-78)||(29351050-29351125)
chr3 (3-60)||(2207020-2207077)
chr3 (108-193)||(13155942-13156027)
chr3 (3-78)||(3656458-3656532)
chr3 (108-185)||(12566023-12566100)
chr3 (108-185)||(13260426-13260503)
chr3 (239-282)||(8223491-8223534)
chr3 (240-282)||(4106822-4106864)
chr3 (240-282)||(4110674-4110716)
chr3 (240-282)||(8488886-8488928)
chr3 (240-282)||(15965611-15965653)
chr3 (240-282)||(15969535-15969577)
chr3 (240-282)||(15973459-15973501)
chr3 (240-282)||(16749416-16749458)
chr3 (240-282)||(18350271-18350313)
chr3 (240-282)||(19776441-19776483)
chr3 (240-282)||(22758676-22758718)
chr3 (240-282)||(43888597-43888639)
chr3 (207-247)||(12971242-12971282)
chr3 (108-147)||(13166562-13166602)
chr3 (202-250)||(35456397-35456445)
chr3 (240-280)||(37439056-37439096)
[»] chr1 (28 HSPs)
chr1 (78-291)||(23192137-23192350)
chr1 (78-291)||(39587669-39587882)
chr1 (78-291)||(40166535-40166748)
chr1 (78-250)||(16036231-16036404)
chr1 (202-291)||(25844326-25844415)
chr1 (78-291)||(12260565-12260774)
chr1 (201-291)||(16834046-16834136)
chr1 (201-291)||(19798434-19798524)
chr1 (202-291)||(38621279-38621368)
chr1 (202-291)||(39200196-39200285)
chr1 (3-86)||(23192037-23192120)
chr1 (206-289)||(47450663-47450746)
chr1 (202-291)||(33300678-33300767)
chr1 (148-291)||(7882557-7882700)
chr1 (202-291)||(16649070-16649158)
chr1 (3-78)||(16036429-16036504)
chr1 (3-86)||(40166765-40166848)
chr1 (78-184)||(46697017-46697120)
chr1 (6-64)||(12260813-12260871)
chr1 (23-86)||(39587589-39587652)
chr1 (240-282)||(1924550-1924592)
chr1 (240-282)||(20923564-20923606)
chr1 (240-282)||(21498207-21498249)
chr1 (240-282)||(39243519-39243561)
chr1 (240-282)||(39247074-39247116)
chr1 (240-282)||(41387471-41387513)
chr1 (3-54)||(46697180-46697234)
chr1 (120-184)||(50098743-50098807)
[»] chr2 (30 HSPs)
chr2 (78-291)||(31327324-31327535)
chr2 (78-222)||(31334114-31334256)
chr2 (78-186)||(28603776-28603884)
chr2 (143-288)||(7737237-7737382)
chr2 (78-193)||(42925968-42926083)
chr2 (202-291)||(1934428-1934517)
chr2 (202-291)||(12797498-12797587)
chr2 (202-291)||(9180161-9180250)
chr2 (202-291)||(9184852-9184941)
chr2 (206-292)||(29678328-29678413)
chr2 (202-291)||(25477729-25477818)
chr2 (10-78)||(28603909-28603977)
chr2 (202-291)||(30651489-30651574)
chr2 (3-78)||(31328885-31328960)
chr2 (3-78)||(31335606-31335681)
chr2 (3-78)||(44630646-44630721)
chr2 (107-250)||(19577921-19578063)
chr2 (5-78)||(42925870-42925943)
chr2 (227-291)||(25496782-25496846)
chr2 (240-290)||(19094017-19094067)
chr2 (106-184)||(23853750-23853828)
chr2 (202-250)||(17453049-17453097)
chr2 (259-291)||(42926134-42926166)
chr2 (240-282)||(1284070-1284112)
chr2 (240-282)||(6856753-6856795)
chr2 (240-282)||(23068249-23068291)
chr2 (108-162)||(29892367-29892421)
chr2 (240-282)||(30344412-30344454)
chr2 (240-282)||(42248783-42248825)
chr2 (255-291)||(30619441-30619477)
[»] chr4 (34 HSPs)
chr4 (78-291)||(19107182-19107395)
chr4 (78-292)||(47244713-47244928)
chr4 (78-291)||(8029653-8029866)
chr4 (83-291)||(19102552-19102759)
chr4 (202-291)||(16421613-16421702)
chr4 (202-291)||(31274085-31274174)
chr4 (201-291)||(32221001-32221091)
chr4 (202-291)||(31269596-31269685)
chr4 (202-291)||(37259299-37259388)
chr4 (203-291)||(33468439-33468527)
chr4 (202-291)||(37263999-37264088)
chr4 (202-292)||(33462799-33462889)
chr4 (202-291)||(51698493-51698582)
chr4 (3-78)||(19102789-19102864)
chr4 (3-86)||(47244945-47245028)
chr4 (201-291)||(48276092-48276181)
chr4 (202-291)||(12823323-12823412)
chr4 (202-291)||(55252237-55252326)
chr4 (207-291)||(19540619-19540703)
chr4 (9-78)||(19107420-19107489)
chr4 (207-291)||(13060032-13060116)
chr4 (206-290)||(19906812-19906896)
chr4 (208-291)||(42758297-42758380)
chr4 (78-186)||(12875094-12875202)
chr4 (3-78)||(8029553-8029628)
chr4 (6-63)||(12875242-12875299)
chr4 (3-49)||(48276034-48276080)
chr4 (240-282)||(12488354-12488396)
chr4 (240-282)||(14953551-14953593)
chr4 (240-282)||(15011312-15011354)
chr4 (240-282)||(15225721-15225763)
chr4 (240-282)||(25690550-25690592)
chr4 (156-184)||(15451517-15451545)
chr4 (6-54)||(16955171-16955219)
[»] scaffold0054 (3 HSPs)
scaffold0054 (78-291)||(26027-26239)
scaffold0054 (202-291)||(29747-29836)
scaffold0054 (3-77)||(26265-26339)
[»] chr5 (23 HSPs)
chr5 (78-291)||(9726064-9726277)
chr5 (106-291)||(4872473-4872657)
chr5 (106-291)||(35679223-35679411)
chr5 (202-291)||(37248235-37248324)
chr5 (202-291)||(12103599-12103686)
chr5 (202-291)||(20180590-20180679)
chr5 (202-290)||(40148470-40148556)
chr5 (202-291)||(39518970-39519055)
chr5 (7-78)||(9725968-9726039)
chr5 (3-81)||(35679096-35679174)
chr5 (3-77)||(4872711-4872785)
chr5 (202-291)||(39523609-39523694)
chr5 (108-182)||(16807732-16807806)
chr5 (84-185)||(23688771-23688872)
chr5 (100-185)||(25688982-25689067)
chr5 (231-291)||(6513377-6513437)
chr5 (3-54)||(17162704-17162755)
chr5 (240-282)||(10754006-10754048)
chr5 (240-282)||(41096954-41096996)
chr5 (206-250)||(15149295-15149339)
chr5 (6-54)||(15413892-15413940)
chr5 (83-131)||(17550863-17550911)
chr5 (255-291)||(23688668-23688704)
[»] chr7 (24 HSPs)
chr7 (6-291)||(13313516-13313807)
chr7 (116-291)||(30258674-30258849)
chr7 (78-250)||(26286455-26286628)
chr7 (202-291)||(12799958-12800047)
chr7 (201-292)||(8268866-8268957)
chr7 (201-291)||(42626022-42626112)
chr7 (202-291)||(4930793-4930882)
chr7 (202-291)||(27238722-27238811)
chr7 (202-289)||(2595398-2595485)
chr7 (4-65)||(4580295-4580356)
chr7 (5-86)||(26286357-26286438)
chr7 (3-101)||(30258882-30258979)
chr7 (237-291)||(44422607-44422661)
chr7 (154-283)||(4580081-4580210)
chr7 (78-132)||(4580210-4580264)
chr7 (202-240)||(3880586-3880624)
chr7 (240-282)||(14259562-14259604)
chr7 (240-282)||(18426483-18426525)
chr7 (240-282)||(20488504-20488546)
chr7 (240-282)||(32302395-32302437)
chr7 (240-282)||(45169427-45169469)
chr7 (237-282)||(846101-846146)
chr7 (237-282)||(853478-853523)
chr7 (237-282)||(1211482-1211527)
[»] chr6 (35 HSPs)
chr6 (78-291)||(12689545-12689770)
chr6 (106-268)||(19674381-19674543)
chr6 (3-86)||(12689787-12689870)
chr6 (202-292)||(16835593-16835683)
chr6 (206-291)||(6407300-6407385)
chr6 (202-291)||(11534141-11534230)
chr6 (202-291)||(14509544-14509633)
chr6 (202-291)||(33687082-33687171)
chr6 (201-291)||(25313887-25313977)
chr6 (201-291)||(26201381-26201471)
chr6 (202-291)||(2699528-2699617)
chr6 (202-291)||(20747737-20747825)
chr6 (206-291)||(11428531-11428616)
chr6 (202-291)||(11559651-11559740)
chr6 (3-76)||(19674598-19674671)
chr6 (201-291)||(4156785-4156875)
chr6 (202-291)||(11570179-11570268)
chr6 (113-186)||(22610189-22610262)
chr6 (106-193)||(12799292-12799379)
chr6 (126-185)||(20506465-20506524)
chr6 (16-78)||(22610332-22610394)
chr6 (6-78)||(12799167-12799239)
chr6 (255-290)||(2862979-2863014)
chr6 (255-290)||(2882283-2882318)
chr6 (155-186)||(17281289-17281320)
chr6 (240-282)||(16760938-16760980)
chr6 (240-282)||(19772508-19772550)
chr6 (240-282)||(22806907-22806949)
chr6 (240-282)||(22949788-22949830)
chr6 (240-282)||(22953744-22953786)
chr6 (240-282)||(23872232-23872274)
chr6 (240-282)||(23876188-23876230)
chr6 (155-184)||(5600695-5600724)
chr6 (240-285)||(26981148-26981193)
chr6 (202-249)||(17599980-17600028)
[»] scaffold0011 (2 HSPs)
scaffold0011 (91-290)||(145746-145945)
scaffold0011 (240-282)||(126959-127001)
[»] scaffold0009 (2 HSPs)
scaffold0009 (79-246)||(147703-147871)
scaffold0009 (7-77)||(147606-147676)
[»] chr8 (28 HSPs)
chr8 (78-228)||(22714306-22714456)
chr8 (78-250)||(7002262-7002434)
chr8 (202-291)||(38181677-38181766)
chr8 (202-292)||(33417101-33417191)
chr8 (202-291)||(1910389-1910478)
chr8 (202-291)||(17020923-17021012)
chr8 (202-291)||(17551360-17551449)
chr8 (202-291)||(40125330-40125419)
chr8 (206-291)||(44925360-44925445)
chr8 (202-291)||(19167219-19167308)
chr8 (202-291)||(15950987-15951076)
chr8 (202-291)||(18875823-18875912)
chr8 (202-291)||(1808018-1808107)
chr8 (202-291)||(17953408-17953497)
chr8 (3-66)||(17953339-17953402)
chr8 (207-290)||(15875132-15875215)
chr8 (217-290)||(36684157-36684230)
chr8 (202-291)||(17026499-17026579)
chr8 (202-291)||(17556991-17557071)
chr8 (6-78)||(28864119-28864191)
chr8 (108-157)||(28864017-28864066)
chr8 (240-282)||(18862066-18862108)
chr8 (240-282)||(21384300-21384342)
chr8 (240-282)||(21387720-21387762)
chr8 (240-282)||(21827435-21827477)
chr8 (240-282)||(23915048-23915090)
chr8 (161-191)||(42157617-42157647)
chr8 (259-292)||(10933806-10933839)
[»] scaffold0002 (4 HSPs)
scaffold0002 (202-291)||(4635-4724)
scaffold0002 (202-291)||(443378-443467)
scaffold0002 (108-193)||(150961-151046)
scaffold0002 (108-147)||(140386-140426)
[»] scaffold0352 (1 HSPs)
scaffold0352 (202-291)||(7678-7767)
[»] scaffold0575 (1 HSPs)
scaffold0575 (240-282)||(5377-5419)
[»] scaffold0572 (1 HSPs)
scaffold0572 (240-282)||(10472-10514)
[»] scaffold0452 (1 HSPs)
scaffold0452 (240-282)||(12464-12506)
[»] scaffold0431 (1 HSPs)
scaffold0431 (240-282)||(14973-15015)
[»] scaffold0415 (1 HSPs)
scaffold0415 (240-282)||(1044-1086)
[»] scaffold0292 (1 HSPs)
scaffold0292 (240-282)||(7723-7765)
[»] scaffold0232 (1 HSPs)
scaffold0232 (240-282)||(11750-11792)
[»] scaffold0229 (1 HSPs)
scaffold0229 (240-282)||(10922-10964)
[»] scaffold0157 (1 HSPs)
scaffold0157 (240-282)||(32081-32123)
[»] scaffold0141 (1 HSPs)
scaffold0141 (240-282)||(13508-13550)
[»] scaffold0124 (1 HSPs)
scaffold0124 (240-282)||(21482-21524)
[»] scaffold0096 (1 HSPs)
scaffold0096 (240-282)||(22265-22307)
[»] scaffold0034 (1 HSPs)
scaffold0034 (240-282)||(121122-121164)
[»] scaffold0031 (1 HSPs)
scaffold0031 (240-282)||(35507-35549)
[»] scaffold0018 (1 HSPs)
scaffold0018 (240-282)||(21863-21905)
[»] scaffold0327 (1 HSPs)
scaffold0327 (237-282)||(19715-19760)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 79 - 291
Target Start/End: Original strand, 2207111 - 2207323
Alignment:
Q  79 attagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaagg 178  Q
    ||||||||||| |||||||| || |  |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  2207111 attagtttgttacttgagctgatctatgggttgcttaatttttaagtttacttaattattaagtttcttcaaatcagttacaaactctccctgtaaaagg 2207210  T
Q  179 agagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttc 278  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||    
T  2207211 agagctcatctagttcaaaaaacacaccaaagagtttcattgagttgtcggaaactctttctctcttctccctttcttgacttgtgttgacgagtctttc 2207310  T
Q  279 ttctcttcatctc 291  Q
    |||||||||||||    
T  2207311 ttctcttcatctc 2207323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 78 - 292
Target Start/End: Complemental strand, 29351025 - 29350811
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||| |||||| ||||| || || ||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29351025 gattaatttgttacttgacctgatatgtaggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaag 29350926  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||| ||| ||||||        |||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||    
T  29350925 gagagttcacctagttcaaaaaacacaccaaagagtttcattgagttgtcgggaactctttctctcttcttcctttattgacttgtgttgacgagtcttt 29350826  T
Q  278 cttctcttcatctca 292  Q
    |||||||||||||||    
T  29350825 cttctcttcatctca 29350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 129 - 291
Target Start/End: Original strand, 3656591 - 3656753
Alignment:
Q  129 cttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcg 228  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||       || |||||||||||||||| |||| |||    
T  3656591 cttaattcttaagtttcaccaaattagttacaaactctccctataaaaggagagctcacctagttcaaaaaatagaccaaagagtttcattcagttatcg 3656690  T
Q  229 gaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||| |||||||||||||| || | |||||||||||| | ||||||||||||||||||||    
T  3656691 gaaactctttctctcttctccctttctggacttgtgttgatgggtctttcttctcttcatctc 3656753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 20520618 - 20520528
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  20520618 tacaccaaagagtttcattgagttggcggaaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 20520528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 7570651 - 7570740
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  7570651 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 7570740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 23660899 - 23660988
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  23660899 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 23660988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 23665558 - 23665647
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  23665558 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 23665647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 24037806 - 24037895
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  24037806 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 24037895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 27709592 - 27709504
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  27709592 acaccaaagagtttcattgagttgtcggaaactctttctctcttctccttttcttgacttgtgttgacgagtctttcttctcttcatct 27709504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 757799 - 757888
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  757799 acaccaaagagtttcattgagttgtcgggaattctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 757888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 3419649 - 3419560
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  3419649 acaccaaagagtttcactgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 3419560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 46964672 - 46964583
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  46964672 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgatttgtgttgacgagtctttcttctcttcatctc 46964583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 55326438 - 55326350
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  55326438 acaccaaagattttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatct 55326350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 12965321 - 12965411
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||| ||||||||| ||||||||||||| ||||| |||||||||||||| || ||||||||||||||| | |||||||||||||||||||    
T  12965321 tacacaaaagagttttattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacaattctttcttctcttcatctc 12965411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 29351125 - 29351050
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  29351125 tttgttgtgataagattgaaaattcaactgaatttcctatctttccttcattagtttgttttatctaatcttgtgg 29351050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 2207020 - 2207077
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttg 60  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  2207020 tttgttgtgatatgattgagaattcaactgaattttctatctttccttcattagtttg 2207077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 13155942 - 13156027
Alignment:
Q  108 gttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagtt 193  Q
    |||| ||||||||||||||||||||| ||||||||||||||| || | | |  |||||||||||||||||||||||||| ||||||    
T  13155942 gttgtttaatttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggagagctcacctagtt 13156027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 3656458 - 3656532
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||||| |||||| |||| |||||||||||||||||||  ||||||||||||||||| ||||||||||||    
T  3656458 tttgttgtgataagattgataatc-aactgaatttcctatctttttttcattagtttgtttcagctaatcttgtgg 3656532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 12566023 - 12566100
Alignment:
Q  108 gttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctc 185  Q
    |||| ||||||||||||||||||||||||| ||||||||||| || | | |  ||||||||||||||||| |||||||    
T  12566023 gttgtttaatttttaagtttacttaattctgaagtttctccagattaatcatgaactctccctataaaagcagagctc 12566100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 13260426 - 13260503
Alignment:
Q  108 gttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctc 185  Q
    |||| ||||||||||||||||||||||||| ||||||||||| || | | |  ||||||||||||||||| |||||||    
T  13260426 gttgtttaatttttaagtttacttaattctgaagtttctccagattaatcatgaactctccctataaaagcagagctc 13260503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 8223534 - 8223491
Alignment:
Q  239 ctctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||| |  ||||||||||||||||||||||||||||    
T  8223534 ctctcttctcccttctttgacttgtgttgacgagtctttcttct 8223491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 4106822 - 4106864
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  4106822 tctcttctccctcttttgacttgtgttgacgagtctttcttct 4106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 4110674 - 4110716
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  4110674 tctcttctccctcttttgacttgtgttgacgagtctttcttct 4110716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 8488886 - 8488928
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  8488886 tctcttctccctcttttgacttgtgttgacgagtctttcttct 8488928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 15965653 - 15965611
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  15965653 tctcttctccctcttttgacttgtgttgacgagtctttcttct 15965611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 15969577 - 15969535
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  15969577 tctcttctccctcttttgacttgtgttgacgagtctttcttct 15969535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 15973501 - 15973459
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  15973501 tctcttctccctcttttgacttgtgttgacgagtctttcttct 15973459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 16749416 - 16749458
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  16749416 tctcttctccctcttttgacttgtgttgacgagtctttcttct 16749458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 18350271 - 18350313
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  18350271 tctcttctccctcttttgacttgtgttgacgagtctttcttct 18350313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 19776483 - 19776441
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  19776483 tctcttctccctcttttgacttgtgttgacgagtctttcttct 19776441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 22758676 - 22758718
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  22758676 tctcttctccctcttttgacttgtgttgacgagtctttcttct 22758718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 43888597 - 43888639
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  43888597 tctcttctccctcttttgacttgtgttgacgagtctttcttct 43888639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 12971242 - 12971282
Alignment:
Q  207 aaagagtttcattgagttgtcggaaactccttctctcttct 247  Q
    ||||| ||||||||||||||| ||||||| |||||||||||    
T  12971242 aaagaatttcattgagttgtccgaaactcgttctctcttct 12971282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 13166562 - 13166602
Alignment:
Q  108 gttgcttaat-ttttaagtttacttaattcttaagtttctc 147  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  13166562 gttgcttaatatttttagtttacttaattcttaagtttctc 13166602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 35456397 - 35456445
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctccc 250  Q
    |||||||| ||||| ||||||||||||  ||||| ||||||||||||||    
T  35456397 acaccaaatagttttattgagttgtcgataactctttctctcttctccc 35456445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 37439056 - 37439096
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttctt 280  Q
    |||||||||||  | ||||||||||||||||||||||||||    
T  37439056 tctcttctccctcttttgacttgtgttgacgagtctttctt 37439096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 78 - 291
Target Start/End: Original strand, 23192137 - 23192350
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  23192137 gattagtttgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattctttagtttctccaaattagttacaaactctccctataaaag 23192236  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||| ||       ||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| ||||||    
T  23192237 gagagctcacctaattcaaaaattacaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgggtcttt 23192336  T
Q  278 cttctcttcatctc 291  Q
    ||||||||||||||    
T  23192337 cttctcttcatctc 23192350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 78 - 291
Target Start/End: Original strand, 39587669 - 39587882
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  39587669 gattagtttgttacttgagctgatatgcgggttgcttaatttttaagtttacttaattcttatgtttctccaaattagttacaaactctccctgtaaaag 39587768  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||||||        |||| ||| ||||||||||||||||| | ||||  |||||||||||||  |  || ||||||||||||||||||||    
T  39587769 gagagctcacctagttcaaaaaacacactaaatagtttcattgagttgtcaggaactatttctctcttctccattccttaacttgtgttgacgagtcttt 39587868  T
Q  278 cttctcttcatctc 291  Q
    ||||||||||||||    
T  39587869 cttctcttcatctc 39587882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 40166748 - 40166535
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||| |||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||| |||||    
T  40166748 gattaatttgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttataaattatccctaaaaaag 40166649  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||| ||| ||||||       |||||| |||||||||||||||||||||| ||||| |||||||||||||  || |||||| ||||||||||||||||    
T  40166648 gagagttcacctagttcaaaaattacacctaagagtttcattgagttgtcgggaactctttctctcttctccttttcttgactcgtgttgacgagtcttt 40166549  T
Q  278 cttctcttcatctc 291  Q
     |||||| ||||||    
T  40166548 attctctccatctc 40166535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 16036404 - 16036231
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16036404 gattagtttgtttcttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaag 16036305  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttc-attgagttgtcggaaactccttctctcttctccc 250  Q
     |||||||| ||||||       |||||||||||||||| ||| ||||||||  ||||| ||||||||||||||    
T  16036304 cagagctcacctagttcaaaaattacaccaaagagtttctattaagttgtcgagaactctttctctcttctccc 16036231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 25844415 - 25844326
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  25844415 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 25844326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 12260774 - 12260565
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||| |||||| |||||||| || || | ||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  12260774 gattaatttgttacttgagctgatatgtgagttgcttaattttgaagttgacttaattcttaagtttttccaaattagttacaaactct-cctataaaag 12260676  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||||||        |||||||||| ||  |||||||||| |  ||||| |||||||||||||| | |    |||||||| ||||||  ||    
T  12260675 gagagctcacctagttcaagaaacacaccaaagaattctattgagttgttgagaactctttctctcttctcccttca---gcttgtgttaacgagttatt 12260579  T
Q  278 cttctcttcatctc 291  Q
    ||||||||||||||    
T  12260578 cttctcttcatctc 12260565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 16834136 - 16834046
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  16834136 tacaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgatgagtctttcttctcttcatctc 16834046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 19798434 - 19798524
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  19798434 tacaccaaagagtttcattgagttgtcgggaactctttctctcttctccttttcttgacttgtgttgacgagtctttcttctcttcatctc 19798524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 38621368 - 38621279
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  38621368 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtttttcttctcttcatctc 38621279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 39200196 - 39200285
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  39200196 acaccaaagagtttcattgagttgtcgggaaccctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 39200285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 23192037 - 23192120
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggattagttt 86  Q
    |||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  23192037 tttgttgtgataagattgagaatccagcttaatttcctatctttccttcattagtttgtttcatctaatcttgtggatttgttt 23192120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 47450663 - 47450746
Alignment:
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatc 289  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  47450663 caaagagtttcattgagttatcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatc 47450746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 33300678 - 33300767
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||||| || ||||||||||||||| |||||||||| ||||||||||    
T  33300678 acaccaaagagtttcattgaattgtcgggaactctttctctcttctccctttcttgacttgtgttgacaagtctttcttttcttcatctc 33300767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 7882700 - 7882557
Alignment:
Q  148 caaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnntacaccaaagagtttc-attgagttgtcggaaactccttctctcttc 246  Q
    ||||| ||||||||||||||| |  |||||||||||||| ||||||        ||| ||||||||||| ||||||||||||  ||||| ||||||||||    
T  7882700 caaattagttacaaactctcc-tgcaaaaggagagctcacctagttcaaagatcacatcaaagagtttctattgagttgtcgagaactctttctctcttc 7882602  T
Q  247 tcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||| || || ||||||||||||||||||||||||||||||||||    
T  7882601 tccctttcttaacttgtgttgacgagtctttcttctcttcatctc 7882557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 16649070 - 16649158
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||| ||||||||||||||||||| ||||  |||||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  16649070 acaccaaaaagtttcattgagttgtcgggaactttttctctcttctccc-ttcttgacttgtgttgacgagtctttcttctattcatctc 16649158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 16036504 - 16036429
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||  |||||||||||    
T  16036504 tttgttgtgataagattgagaatccaactgaatttcttatctttccttcattagtttctttcagttaatcttgtgg 16036429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 40166848 - 40166765
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggattagttt 86  Q
    |||||||||||| | |||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||| ||||    
T  40166848 tttgttgtgataagcttgagaatccaactgaatatcctatctttgcttcattagtctgtttcatctaatcttgtggatttgttt 40166765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 46697120 - 46697017
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||| | || || | |||||||||||| |||||| ||||||||||||||||||| ||||| ||||| |||||||  ||||||||     
T  46697120 gattagtttgtt-cttgagttgatctgtgtgttgcttaatttctaagttgacttaattcttaagtttcttcaaattagttaaaaactct--ctataaaaa 46697024  T
Q  178 gagagct 184  Q
    |||||||    
T  46697023 gagagct 46697017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 12260871 - 12260813
Alignment:
Q  6 gttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttc 64  Q
    ||||||||| ||||||||||||||||||| || |||| |||| ||||||||||||||||    
T  12260871 gttgtgataagattgagaatccaactgaaatttctatgtttctttcattagtttgtttc 12260813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 39587589 - 39587652
Alignment:
Q  23 aatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggattagttt 86  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||| |||||||||| |||| ||||    
T  39587589 aatctaactgaattttctatattttcttcattagttagtttcatctaatcttgttgatttgttt 39587652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 1924550 - 1924592
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  1924550 tctcttctccctcttttgacttgtgttgacgagtctttcttct 1924592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 20923564 - 20923606
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  20923564 tctcttctccctcttttgacttgtgttgacgagtctttcttct 20923606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 21498249 - 21498207
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  21498249 tctcttctccctcttttgacttgtgttgacgagtctttcttct 21498207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 39243519 - 39243561
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  39243519 tctcttctccctcttttgacttgtgttgacgagtctttcttct 39243561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 39247074 - 39247116
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  39247074 tctcttctccctcttttgacttgtgttgacgagtctttcttct 39247116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 41387471 - 41387513
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  41387471 tctcttctccctcttttgacttgtgttgacgagtctttcttct 41387513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 46697234 - 46697180
Alignment:
Q  3 tttgttgtgatatgattgagaat---ccaactgaatttcctatctttccttcatt 54  Q
    |||||||||||| ||||||||||   |||||||| || |||||||||||||||||    
T  46697234 tttgttgtgataagattgagaatattccaactgagttccctatctttccttcatt 46697180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 50098743 - 50098807
Alignment:
Q  120 ttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagct 184  Q
    |||||||| |||||| |||||||  ||||  ||  |||||||||||||| |||||||||||||||    
T  50098743 ttaagtttgcttaatccttaagtcactccggatttgttacaaactctccttataaaaggagagct 50098807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 31327535 - 31327324
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||||| || ||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31327535 gattagtttgttacttgagctaatatg--ggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaag 31327438  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||||||        |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||| |||||||    
T  31327437 gagagctcacctagttcaaaaatcacaccaaagagtttcattgagttgtcgggaactctttctctcttctcccttttttgacttgtgttgacaagtcttt 31327338  T
Q  278 cttctcttcatctc 291  Q
    ||||||||||||||    
T  31327337 cttctcttcatctc 31327324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 31334256 - 31334114
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||||| || ||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31334256 gattagtttgttacttgagctaatatg--ggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaag 31334159  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgag 222  Q
    ||||||||| ||||||        |||||||||||||||||||||    
T  31334158 gagagctcacctagttcaaaaatcacaccaaagagtttcattgag 31334114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 28603884 - 28603776
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  28603884 gattagtttgttacttgagctgatttggaggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaaa 28603785  T
Q  178 gagagctca 186  Q
    |||||||||    
T  28603784 gagagctca 28603776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 288
Target Start/End: Original strand, 7737237 - 7737382
Alignment:
Q  143 ttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctct 242  Q
    ||||| |||| |||||||||||||| |||||||||||||||||| ||||||       |||| |||| | ||||||||||||||||||||||| ||||||    
T  7737237 ttctcaaaattagttacaaactctctctataaaaggagagctcacctagttcaaaaattacatcaaaaaatttcattgagttgtcggaaactctttctct 7737336  T
Q  243 cttctcccattattgacttgtgttgacgagtctttcttctcttcat 288  Q
    |||||||| || |||| |||||||||||||| ||||||||||||||    
T  7737337 cttctccctttcttgatttgtgttgacgagtttttcttctcttcat 7737382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 42925968 - 42926083
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||||||| || |||||||| || || | ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  42925968 gattagtttcttacttgagctgatatgtgagttgcttaatttttaagtttacttaattcttaaatttctctaaattagttacaaactctccctataaaag 42926067  T
Q  178 gagagctcatctagtt 193  Q
    ||||||||| ||||||    
T  42926068 gagagctcacctagtt 42926083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 1934428 - 1934517
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  1934428 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 1934517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 12797587 - 12797498
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  12797587 acaccaaagagtttcattgagttgtcggaaactctttatctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 12797498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 9180161 - 9180250
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  9180161 acaccaaagagtttcattgagatgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 9180250  T

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Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 9184852 - 9184941
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  9184852 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagcctttcttctcttcatctc 9184941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 29678413 - 29678328
Alignment:
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctca 292  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  29678413 caaagaatttcattgagttgtcggaa-ctctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctca 29678328  T

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Target: chr2; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 25477729 - 25477818
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| | ||  |||||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  25477729 acaccaaagagtttcattgagttgtcgggagctatttctctcttctctctttcttgacttgtgttgacgagtctttcttctcttcatctc 25477818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 28603977 - 28603909
Alignment:
Q  10 tgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28603977 tgataagattgagaatccaactgaatttcctatctttccttcattagtttgtttcagctaatcttgtgg 28603909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 30651574 - 30651489
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  30651574 acaccaaagagttttattgagttgtcgggaactctttctctcttctccc----ttgacttgtgttgacgagtctttcttctcttcatctc 30651489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 31328960 - 31328885
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  31328960 tttgttgtgataagattgagaatccaactgaatttcttatctttctttcattagtttgtttcatctaatcttgtgg 31328885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 31335681 - 31335606
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  31335681 tttgttgtgataagattgagaatccaactgaatttcttatctttctttcattagtttgtttcatctaatcttgtgg 31335606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 44630646 - 44630721
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  44630646 tttgttgtgataagattgaaaatccaactgaattttctatctttccttcattagtttgtttcatctaatcttgtgg 44630721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 19577921 - 19578063
Alignment:
Q  107 ggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnntacacc 206  Q
    ||||||||||||  |||||||||||||||||||||||| |||| || |||||||||  ||| |||||||||||||||||| ||||||        ||||     
T  19577921 ggttgcttaattactaagtttacttaattcttaagtttatccagattagttacaaa-actctctataaaaggagagctcacctagttcaaaaatcacact 19578019  T
Q  207 aaagagtttcattgagttgtcggaaactccttctctcttctccc 250  Q
    ||| | ||| |||||||||||| |||||| ||||||||||||||    
T  19578020 aaatatttttattgagttgtcgaaaactctttctctcttctccc 19578063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 42925870 - 42925943
Alignment:
Q  5 tgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  42925870 tgttgtgataagattgagaatccaactgaattccctgtctgtccttcattagtttgtttcagctaatcttgtgg 42925943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 25496782 - 25496846
Alignment:
Q  227 cggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  25496782 cggaaactctttctctcttctccctttcttgacttgtgttgacgaatctttcttctcttcatctc 25496846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 19094017 - 19094067
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    ||||||||||| || || |||||||||||||||| ||||||||||||||||    
T  19094017 tctcttctccctttctttacttgtgttgacgagtatttcttctcttcatct 19094067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 23853750 - 23853828
Alignment:
Q  106 gggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagct 184  Q
    ||||||| | ||||||||||||||||||||  ||||||||||   || ||||| ||||||| |||||||||||| ||||    
T  23853750 gggttgcatgatttttaagtttacttaatttctaagtttctctgtattagttataaactcttcctataaaaggatagct 23853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 17453049 - 17453097
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctccc 250  Q
    |||||||||||||| ||||||||||||  ||||| ||||||||||||||    
T  17453049 acaccaaagagttttattgagttgtcgagaactctttctctcttctccc 17453097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 42926134 - 42926166
Alignment:
Q  259 cttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||    
T  42926134 cttgtgttgacgagtctttcttctcttcatctc 42926166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 1284112 - 1284070
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  1284112 tctcttctccctcttttgacttgtgttgacgagtctttcttct 1284070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 6856795 - 6856753
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  6856795 tctcttctccctcttttgacttgtgttgacgagtctttcttct 6856753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 23068249 - 23068291
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  23068249 tctcttctccctcttttgacttgtgttgacgagtctttcttct 23068291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 29892421 - 29892367
Alignment:
Q  108 gttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaa 162  Q
    |||| ||||||| ||||||||||| ||| ||||||||||| |||| |||||||||    
T  29892421 gttgtttaatttctaagtttacttgattattaagtttctctaaattagttacaaa 29892367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 30344412 - 30344454
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  30344412 tctcttctccctcttttgacttgtgttgacgagtctttcttct 30344454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 42248825 - 42248783
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  42248825 tctcttctccctcttttgacttgtgttgacgagtctttcttct 42248783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 30619477 - 30619441
Alignment:
Q  255 ttgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||| | |||||||||||||||||    
T  30619477 ttgacttgtgttgacgaatttttcttctcttcatctc 30619441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 19107395 - 19107182
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  19107395 gattagtttgttacttgagctgatatgtgggttgcttaatttttaagtttacttaattcttaaatttctccaaattagttacaaattctccctataaaag 19107296  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||||||        |||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||    
T  19107295 gagagctcacctagttcaaaaatcacaccaaagagtttcattgagttgtcggaaactctttctctcttctctctttcttgacttgtgttgacgagtcttt 19107196  T
Q  278 cttctcttcatctc 291  Q
    |||||||| |||||    
T  19107195 cttctctttatctc 19107182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 78 - 292
Target Start/End: Complemental strand, 47244928 - 47244713
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47244928 gattagtttgttacttgagcttatctgtgggttgcttaattttaaagtttacttaattcttaagtttctccaaatcagttacaaattctccctataaaag 47244829  T
Q  178 gagagctcatctagtt-nnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctt 276  Q
    ||||||||||||||||        |||| |||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |    
T  47244828 gagagctcatctagttaaaaaaaatacatcaaagagtttcatttagttgtcgggaactctttctctcttctccctttattgacttgtgttgacgagtcat 47244729  T
Q  277 tcttctcttcatctca 292  Q
    ||| | ||||||||||    
T  47244728 tctccacttcatctca 47244713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 78 - 291
Target Start/End: Original strand, 8029653 - 8029866
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||||| |||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8029653 gattagtgtgttacttgagctgatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccctataaaag 8029752  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||||||       || |||||||||||||||||||||||||| ||||| |||||||||||||| |  |||| ||||||||||| ||||||    
T  8029753 gagagctcacctagttcaaaaaatataccaaagagtttcattgagttgtcgggaactctttctctcttctcccttccttgatttgtgttgacgtgtcttt 8029852  T
Q  278 cttctcttcatctc 291  Q
    ||||||||||||||    
T  8029853 cttctcttcatctc 8029866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 83 - 291
Target Start/End: Complemental strand, 19102759 - 19102552
Alignment:
Q  83 gtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagag 182  Q
    ||||||| |||||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19102759 gtttgttacttgagctgatatgtgggttgcttaatttttaagtttact-aattcttaagtttctccaaattagttacaaactctccctataaaaggagag 19102661  T
Q  183 ctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||| ||||||        | |||||||||||||||||||||||||| ||||  |||||||||||||| || ||||||||||||||||||||||||||||    
T  19102660 ctcacctagttcaaaaatcaaaccaaagagtttcattgagttgtcgggaactttttctctcttctccctttcttgacttgtgttgacgagtctttcttct 19102561  T
Q  283 cttcatctc 291  Q
    |||||||||    
T  19102560 cttcatctc 19102552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 16421702 - 16421613
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  16421702 acaccaaagagtttcattgagttgtcggaaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 16421613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 31274174 - 31274085
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  31274174 acaccaaagagtttcattgagttgtcggaaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 31274085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 32221001 - 32221091
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  32221001 tacaccaaaaagtttcattgagttgtcggaaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 32221091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 31269685 - 31269596
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  31269685 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 31269596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 37259299 - 37259388
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  37259299 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 37259388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 203 - 291
Target Start/End: Original strand, 33468439 - 33468527
Alignment:
Q  203 caccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  33468439 caccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 33468527  T

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Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 37263999 - 37264088
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||| ||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  37263999 acaccaaagagtttcattgaattgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 37264088  T

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Target: chr4; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 33462799 - 33462889
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctca 292  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  33462799 acaccaaagagtttcattgagttgtcgagaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctctttatctca 33462889  T

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Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 51698582 - 51698493
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||| | ||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||||||    
T  51698582 acaccaaagagtttcattgagttgtcaggaactctttctatcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 51698493  T

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Target: chr4; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 19102864 - 19102789
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  19102864 tttgttgtgataagattgagaatccaactgaattttctatctttccttcattagtttgtttcatctaatcttgtgg 19102789  T

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Target: chr4; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 47245028 - 47244945
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggattagttt 86  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||| ||||    
T  47245028 tttgttgtgatatgattgagaatccaactgaatttcctatacttccttcattagtttgtttaagctaatcttgtggatttgttt 47244945  T

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Target: chr4; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 48276092 - 48276181
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||| ||||||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  48276092 tacactaaagagtttcattgagttgtcgggaa-tctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 48276181  T

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Target: chr4; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 12823323 - 12823412
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||||||| ||||||    
T  12823323 acaccaaagaatttcattgagttgtcggtaactctttctctcttcttcctttcttgacttgtgttgacgagtctttcttctctccatctc 12823412  T

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Target: chr4; HSP #18
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 55252326 - 55252237
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||| ||||||||||||||||| | ||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  55252326 acaccaaagaatttcattgagttgtcgggagctctttctctcttatccctttcttgacttgtgttgacgagtctttcttctcttcatctc 55252237  T

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Target: chr4; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 19540619 - 19540703
Alignment:
Q  207 aaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| || |||| |||||||||||||||||||||||||| |||||    
T  19540619 aaagagtttcattgagttgtcggcaactctttctctcttctccctttcttgatttgtgttgacgagtctttcttctcttaatctc 19540703  T

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Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 19107489 - 19107420
Alignment:
Q  9 gtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  19107489 gtgataagattgagaatccaactgaatttcctatctttccttcattagtttgtttcatctaatcatgtgg 19107420  T

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Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 13060116 - 13060032
Alignment:
Q  207 aaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||| | ||||||| ||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  13060116 aaagagtttcatttaattgtcgggaactctttctctcttctccctttcttgacttgtgttgacgactctttcttctcttcttctc 13060032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 19906896 - 19906812
Alignment:
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||||||||| |||||||||| || ||||| ||||||||||| || || ||||||||||||||||||||||||||||||| ||||    
T  19906896 caaagagtttaattgagttgttgggaactctttctctcttcttcctttcttgacttgtgttgacgagtctttcttctctttatct 19906812  T

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Target: chr4; HSP #23
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 42758297 - 42758380
Alignment:
Q  208 aagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||| ||||||||||||  ||||| |||||||| ||||| || ||||||||||||||||||| |||||||||||||||||    
T  42758297 aagagttttattgagttgtcgagaactctttctctctgctccctttcttgacttgtgttgacgagtttttcttctcttcatctc 42758380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 12875202 - 12875094
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||| | || || | |||||||||||| || |||||||||||||||||||||||  | || |||||||||||||||||  |||||    
T  12875202 gattagtttgttacttgagttgatatgtgagttgcttaatttctacgtttacttaattcttaagtttctttatattagttacaaactctccctggaaaag 12875103  T
Q  178 gagagctca 186  Q
    |||| ||||    
T  12875102 gagatctca 12875094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 8029553 - 8029628
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||  ||| |||||||||| |||||||||||| ||| |||||||||||||||||||| | ||||||||||||    
T  8029553 tttgttgcaataagattgagaattcaactgaatttcttatgtttccttcattagtttgtttaagctaatcttgtgg 8029628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 12875299 - 12875242
Alignment:
Q  6 gttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgttt 63  Q
    |||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||    
T  12875299 gttgtgataacattgagaatgcagctgaatttcctatctttccttcattagtttgttt 12875242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 48276034 - 48276080
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttcct 49  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||||    
T  48276034 tttgtcgtgataagattgagaatccaactgaatgtcctatctttcct 48276080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 12488396 - 12488354
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  12488396 tctcttctccctcttttgacttgtgttgacgagtctttcttct 12488354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 14953551 - 14953593
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  14953551 tctcttctccctcttttgacttgtgttgacgagtctttcttct 14953593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 15011312 - 15011354
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  15011312 tctcttctccctcttttgacttgtgttgacgagtctttcttct 15011354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 15225763 - 15225721
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  15225763 tctcttctccctcttttgacttgtgttgacgagtctttcttct 15225721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 25690592 - 25690550
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  25690592 tctcttctccctcttttgacttgtgttgacgagtctttcttct 25690550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 15451545 - 15451517
Alignment:
Q  156 ttacaaactctccctataaaaggagagct 184  Q
    |||||||||||||||||||||||||||||    
T  15451545 ttacaaactctccctataaaaggagagct 15451517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 16955219 - 16955171
Alignment:
Q  6 gttgtgatatgattgagaatccaactgaatttcctatctttccttcatt 54  Q
    ||||||||| |||||| ||||||||||| ||||  ||||||||||||||    
T  16955219 gttgtgataagattgataatccaactgagtttctaatctttccttcatt 16955171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 26239 - 26027
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| ||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26239 gattagtttgttactt-agctgatttgtgggttgcttaatttttaagttaacttaattcttaagtttctccaaattagttacaaactctccctataaaag 26141  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||||||        |||||||||||||||||||||||| ||| ||||| |||||||||||||| || |||||||||||||| ||||||||    
T  26140 gagagctcacctagttcaaaaatcacaccaaagagtttcattgagttgccgggaactctttctctcttctccctttcttgacttgtgttgatgagtcttt 26041  T
Q  278 cttctcttcatctc 291  Q
    ||||||||||||||    
T  26040 cttctcttcatctc 26027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 29836 - 29747
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  29836 acaccaaagagtttcattgagttgtcggaaactttttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 29747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 26339 - 26265
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtg 77  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||    
T  26339 tttgttgtgataagattgagaatccaactgaattttctatctttccttcattagtctatttcatctaatcttgtg 26265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 78 - 291
Target Start/End: Original strand, 9726064 - 9726277
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||||||||||  ||||||| || || |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  9726064 gattagtttgttatttgagctgatatgtgggttgcttaatttttaaatttacttaattctcaagtttctccaaattagttacaaactctccctgtaaaag 9726163  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtcttt 277  Q
    ||||||||| ||||||        |||||||||||||||||||| ||||||||||||| |||||||||||||  || ||||||||||||||| |||||||    
T  9726164 gagagctcacctagttcaaaaatcacaccaaagagtttcattgaattgtcggaaactctttctctcttctccattttttgacttgtgttgactagtcttt 9726263  T
Q  278 cttctcttcatctc 291  Q
    ||||||||||||||    
T  9726264 cttctcttcatctc 9726277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 4872657 - 4872473
Alignment:
Q  106 gggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnntacac 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||  |||||        | ||    
T  4872657 gggttgcttaatttttaagtttatttaattcttaagtttctccaaattagttacaaactctccctataaaagaagagttcacttagttcaaaaatcatac 4872558  T
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  4872557 caaagagtttcattgagttgtcgggaactctttctctcttctccc-ttcttgacttgtgttgacgagtctttcttctcttcatctc 4872473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 35679223 - 35679411
Alignment:
Q  106 gggttgcttaatttttaag----tttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnnt 201  Q
    |||||||||||||||||||    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||            
T  35679223 gggttgcttaatttttaagtaagtttacttaattcttaagtctctccaaattagttacaaactctccctataaaaggagagctcacctagttcaaaaaac 35679322  T
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||||| || ||||||||| |||||||||| ||||| ||||||||||    
T  35679323 acaccaaagagtttcattgagttgtcgggaactctttctttcttctccccttcttgacttgtattgacgagtc-ttcttttcttcatctc 35679411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 37248235 - 37248324
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  37248235 acaccaaagagtttcattgagttgtcgggaactctttctctcttctctctttcttgacttgtgttgacgagtctttcttctcttcatctc 37248324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 12103686 - 12103599
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||| ||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12103686 acaccaaatagtttcattgagttgtcgggaactc--tctctcttctccctttattgacttgtgttgacgagtctttcttctcttcatctc 12103599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 20180590 - 20180679
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||  || ||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  20180590 acaccaaagagtttcattgagttgtcgggaactgtttatctcttctccctttcttgacttgtgttgacgagtctttcttttcttcatctc 20180679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 40148556 - 40148470
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||| ||||||||||||||||||||||| |||||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  40148556 acacgaaagagtttcattgagttgtcgggaactc--tctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatct 40148470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 39519055 - 39518970
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  39519055 acaccaaagagttttattgagttgtcgggaactctttctctcttctccc----ttgacttgtgttgacgagtctttcttctcttcatctc 39518970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 9725968 - 9726039
Alignment:
Q  7 ttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9725968 ttgtgataagattgagaatccaactgaattttctatctttccttcattagtttgtttcatctaatcttgtgg 9726039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 35679096 - 35679174
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggatt 81  Q
    |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  35679096 tttgttgtgataagattaagaatccaactgaatttcatatctttccttcattagtttgtttaagctaatcttgtggatt 35679174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 4872785 - 4872711
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtg 77  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||||    
T  4872785 tttgttgtgataagattgagaatccaactgaatttcctatatttcattcattagtttgtttcagttaatcttgtg 4872711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 39523694 - 39523609
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||| ||| || |||||||||| ||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  39523694 acaccaaagaattttatcgagttgtcgggaactctttctctcttctccc----ttgacttgtgttgacgagtctttcttctcttcatctc 39523609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 16807732 - 16807806
Alignment:
Q  108 gttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagag 182  Q
    ||||||| ||||||||||||||||||||||||||||||| ||  | ||||||||||| ||||||||||| |||||    
T  16807732 gttgcttgatttttaagtttacttaattcttaagtttcttcagtttagttacaaactttccctataaaatgagag 16807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 23688872 - 23688771
Alignment:
Q  84 tttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagc 183  Q
    |||||| |||| ||| || || |||||||||| ||| ||||||||||||||||||||||||||| | ||  |||||||||| |  |||||||||||||||    
T  23688872 tttgttacttgggctgatatgtgggttgcttagtttataagtttacttaattcttaagtttctctagatttgttacaaacttttactataaaaggagagc 23688773  T
Q  184 tc 185  Q
    ||    
T  23688772 tc 23688771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 25688982 - 25689067
Alignment:
Q  100 atttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctc 185  Q
    ||||| ||||||||||| |||||||||||||||||| |||||||||| |  ||  |||||||||| | ||||||||||||||||||    
T  25688982 atttgtgggttgcttaacttttaagtttacttaattattaagtttctacggatttgttacaaactttacctataaaaggagagctc 25689067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 6513377 - 6513437
Alignment:
Q  231 aactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||| |||||||||||||| || || ||||||||||||||||||||||| ||||||||||    
T  6513377 aactctttctctcttctccctttctttacttgtgttgacgagtctttcttttcttcatctc 6513437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 17162755 - 17162704
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcatt 54  Q
    |||||||||||| |||||||| ||||||||| |||||||||||| |||||||    
T  17162755 tttgttgtgataagattgagagtccaactgagtttcctatcttttcttcatt 17162704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 10754048 - 10754006
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  10754048 tctcttctccctcttttgacttgtgttgacgagtctttcttct 10754006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 41096996 - 41096954
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  41096996 tctcttctccctcttttgacttgtgttgacgagtctttcttct 41096954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 15149339 - 15149295
Alignment:
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctccc 250  Q
    |||||||||| |||||||| |||| ||||| ||||||||||||||    
T  15149339 caaagagttttattgagttatcggcaactctttctctcttctccc 15149295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 15413892 - 15413940
Alignment:
Q  6 gttgtgatatgattgagaatccaactgaatttcctatctttccttcatt 54  Q
    ||||||||| || | ||||| ||| ||||||||||||||||||||||||    
T  15413892 gttgtgataagaataagaattcaagtgaatttcctatctttccttcatt 15413940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 17550863 - 17550911
Alignment:
Q  83 gtttgtttcttgagcttatttgagggttgcttaatttttaagtttactt 131  Q
    ||||||| ||||| || || || ||||||||||||||||||||||||||    
T  17550863 gtttgttacttgaactaatctgcgggttgcttaatttttaagtttactt 17550911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 23688704 - 23688668
Alignment:
Q  255 ttgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  23688704 ttgacttgtgttgacaagtgtttcttctcttcatctc 23688668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 13313516 - 13313807
Alignment:
Q  6 gttgtgatatgattgagaatccaactgaatttcctatctttccttcattagt----ttgtttc------aactaatcttgtggattagtttgtttcttga 95  Q
    ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||    |||||||      |||| |||   |  |||||||||||  ||||    
T  13313516 gttgtgataagatcgagaatccaacagaatttcatatctttccttcattagtgaatttgtttctttttgaacttatccgattaattagtttgttaattga 13313615  T
Q  96 gcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnn 195  Q
    | | ||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| ||||||      
T  13313616 gttgatacgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaattagttacaaactcttcctataaaatgagagttcacctagttca 13313715  T
Q  196 nnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
         ||||||||||||||| |||||||||| || ||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  13313716 aaaattacaccaaagagttttattgagttgtagggaactctttctctcttctccc----ttgacttgtgttgacgagtctttcttctcttcatctc 13313807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 30258849 - 30258674
Alignment:
Q  116 atttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnntacaccaaagagttt 215  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||| |||||||||||| ||||||        ||||||||||||||    
T  30258849 atttttaagtttacttaattcttaagtttcttcgaattagttacaaattctccctatataaggagagctcacctagttcaaaaatcacaccaaagagttt 30258750  T
Q  216 cattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||| |  |||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  30258749 cattgagttgtcaggcactctttttctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 30258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 26286455 - 26286628
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    ||||||||| || |||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  26286455 gattagtttcttacttgagctgatatgtgggttgcataatttttaagtttacttaattcttaagtttctccaaattagttacaaactctccttgtaaaag 26286554  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttc-attgagttgtcggaaactccttctctcttctccc 250  Q
    ||||||||| ||||||        ||||||||||||||| ||||||||||||  ||||| ||||||||||||||    
T  26286555 gagagctcacctagttcaaaaatcacaccaaagagtttctattgagttgtcgagaactctttctctcttctccc 26286628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 12800047 - 12799958
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  12800047 acaccaaagagtttcattgagttgtcggaaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 12799958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 8268957 - 8268866
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctca 292  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  8268957 tacaccaaagagtttcattgagttgtcgagaactctttctctcttctccctttgttgacttgtgttgacgagtctttcttctcttcatctca 8268866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 42626022 - 42626112
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  42626022 tacaccaatgagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 42626112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 4930882 - 4930793
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  4930882 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgaatctttcttctcttcatctc 4930793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 27238811 - 27238722
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| || |||||||    
T  27238811 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttttcctcatctc 27238722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 2595485 - 2595398
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatc 289  Q
    |||| ||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2595485 acacgaaagagtttcattgagttgtcgggaaccctttctctcttctccctttattgacttgtgttgacgagtctttcttttcttcatc 2595398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 4580356 - 4580295
Alignment:
Q  4 ttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttca 65  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4580356 ttgttgtgataagattgagaatccaactgaatttcctatctttccttcattagtttgtttca 4580295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 26286357 - 26286438
Alignment:
Q  5 tgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggattagttt 86  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||    
T  26286357 tgttgtgataagattgagaatccaagtgaattttctatctttccttcattagtttgtttcatctaatcttatggatttgttt 26286438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 30258979 - 30258882
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggattagtttgtttcttgagcttat 101  Q
    |||||||||||| ||||||||||  |||||||||| ||||||||||||| ||||||||||||| |||||||||||| || |||| ||| ||||||||||    
T  30258979 tttgttgtgataagattgagaattgaactgaattttctatctttccttcgttagtttgtttcagctaatcttgtgggtttgtttcttt-ttgagcttat 30258882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 44422607 - 44422661
Alignment:
Q  237 ttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  44422607 ttctctcttctcccctttttgacttgtgttgacgagtctttcttttcttcatctc 44422661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 283
Target Start/End: Complemental strand, 4580210 - 4580081
Alignment:
Q  154 agttacaaactctccctataaaaggagagctcatctagttnnnnnnnt-acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccat 252  Q
    |||||||||||||| ||||||||| |||||||| ||||||       | ||| |||||||||  | |||||||||   ||||| |||||||||||||| |    
T  4580210 agttacaaactctcactataaaag-agagctcacctagttcaaaaaattacagcaaagagttctagtgagttgtcaagaactctttctctcttctccctt 4580112  T
Q  253 tattgacttgtgttgacgagtctttcttctc 283  Q
    | ||||||||||||||||| |||||| ||||    
T  4580111 tcttgacttgtgttgacgaatctttcctctc 4580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 4580264 - 4580210
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttactta 132  Q
    |||||||||||| |||||||| || || | |||||||||||||||||||||||||    
T  4580264 gattagtttgttacttgagctgatatgtgagttgcttaatttttaagtttactta 4580210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 3880624 - 3880586
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttct 240  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  3880624 acaccaaagagtttcattgagttgtcgggaactctttct 3880586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 14259604 - 14259562
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  14259604 tctcttctccctcttttgacttgtgttgacgagtctttcttct 14259562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 18426525 - 18426483
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  18426525 tctcttctccctcttttgacttgtgttgacgagtctttcttct 18426483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 20488546 - 20488504
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  20488546 tctcttctccctcttttgacttgtgttgacgagtctttcttct 20488504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 32302437 - 32302395
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  32302437 tctcttctccctcttttgacttgtgttgacgagtctttcttct 32302395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 45169427 - 45169469
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  45169427 tctcttctccctcttttgacttgtgttgacgagtctttcttct 45169469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 846101 - 846146
Alignment:
Q  237 ttctctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||||| || | ||||||| ||||||||||||||||||    
T  846101 ttctctcttctccctttttcgacttgtcttgacgagtctttcttct 846146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 853478 - 853523
Alignment:
Q  237 ttctctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||||| || | ||||||| ||||||||||||||||||    
T  853478 ttctctcttctccctttttcgacttgtcttgacgagtctttcttct 853523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 1211482 - 1211527
Alignment:
Q  237 ttctctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||||| || | ||||||| ||||||||||||||||||    
T  1211482 ttctctcttctccctttttcgacttgtcttgacgagtctttcttct 1211527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 12689770 - 12689545
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  12689770 gattagtttgatacttgagcttatctgtgggttgcttaatttttaagtttacttaattcttaagtttctccaaatcaattataaactctccttataaaag 12689671  T
Q  178 gagagctcatctagtt------------nnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgt 265  Q
    ||||||||||||| ||                    |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12689670 gagagctcatctaattaaaaaaaaaaaaaaaaaaagacaccaaagagtttcattgagttgtcggaaactctttctctcttctctctttattgacttgtgt 12689571  T
Q  266 tgacgagtctttcttctcttcatctc 291  Q
    |||| | |||||||||||||||||||    
T  12689570 tgacaattctttcttctcttcatctc 12689545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 19674543 - 19674381
Alignment:
Q  106 gggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagttnnnnnnntacac 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||| ||||||||| ||||||        ||||    
T  19674543 gggttgcttaatttttaagtttacttgattcttaagtttctccaaattagttacaaaatatccctataaaaagagagctcacctagttcaaaaatcacac 19674444  T
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttga 268  Q
    ||||||||||||||||| |||||| ||||| |||||||||| ||| || ||||||||||||||    
T  19674443 caaagagtttcattgagctgtcgggaactctttctctcttccccctttcttgacttgtgttga 19674381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 12689870 - 12689787
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtggattagttt 86  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  12689870 tttgttgtgatatgattgagaatccaactgaaattcctatctttccttcattagtttgtttcagctaatcttgtggatttgttt 12689787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 16835593 - 16835683
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctca 292  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  16835593 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctctcttgacttgtgttgacgagtctttcttctcttcatctca 16835683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 6407300 - 6407385
Alignment:
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  6407300 caaagagtttcattgagttgttgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 6407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 11534141 - 11534230
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||| | |||||||||||||||||||||    
T  11534141 acaccaaagagtttcattgagttgtgggaaactctttctctcttctccctttcttgacttgtgttgtcaagtctttcttctcttcatctc 11534230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 14509633 - 14509544
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| ||||||| |||||||||||||||||||||    
T  14509633 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttatgttgacaagtctttcttctcttcatctc 14509544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 33687082 - 33687171
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  33687082 acaccaaagagtttcattgagttgtcgggaactctttttctcttctccctttcttgacttgtgttgacgagtctttcttttcttcatctc 33687171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 25313887 - 25313977
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  25313887 tacaccaaagagtttcattgagttgtcgggaactctttctatcttatccctttcttgacttgtgttgacgagtctttcttttcttcatctc 25313977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 26201381 - 26201471
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  26201381 tacaccaaagagtttcattgagttgtcgggaactctttctatcttatccctttcttgacttgtgttgacgagtctttcttttcttcatctc 26201471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 2699528 - 2699617
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||| ||||||||| |||||| || ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  2699528 acaccaaatagtttcatttagttgttgggaactctttctctcttctcccttttttgacttgtgttgacgagtctttcttctcttcatctc 2699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 20747737 - 20747825
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||| |||||||||| |||||||||||||||||    
T  20747737 acaccaaagagtttcattgagttgtcggaa-ctctttctctcttctccctttcttgacttgcgttgacgagtttttcttctcttcatctc 20747825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 11428616 - 11428531
Alignment:
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||| || ||||||| ||||||||||| |||||||||||||||||    
T  11428616 caaaaagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttatgttgacgagtatttcttctcttcatctc 11428531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 11559651 - 11559740
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||  | ||||| |||||||||||||| || ||||||||||||| | |||||||||||||||||||||    
T  11559651 acaccaaagagtttcattgagttgtgtggaactctttctctcttctccctttcttgacttgtgttgtcaagtctttcttctcttcatctc 11559740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 19674671 - 19674598
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgt 76  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19674671 tttgttttgataagattgagaatccaactgaatttcctatctttccttcattagtttgtttaagctaatcttgt 19674598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 4156785 - 4156875
Alignment:
Q  201 tacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||| | || | |||||||||| ||||||||||||| |||| |||||    
T  4156785 tacaccaaaaagtttcattgagttgtcgggaactctttctctcttctctctttctagacttgtgttaacgagtctttcttttctttatctc 4156875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 11570179 - 11570268
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||| |  | ||||| |||||||||||| | || ||||||||||||| | |||||||||||||||||||||    
T  11570179 acaccaaagagtttcattgagttctacggaactctttctctcttctcactttcttgacttgtgttgtcaagtctttcttctcttcatctc 11570268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 22610262 - 22610189
Alignment:
Q  113 ttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctca 186  Q
    |||||||| |||||||||||||| ||||||||||||| || |||||||||||||| |||||||| |||||||||    
T  22610262 ttaattttcaagtttacttaattattaagtttctccagattagttacaaactctctctataaaaagagagctca 22610189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 12799292 - 12799379
Alignment:
Q  106 gggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagtt 193  Q
    |||||| | ||||| |||| ||||||||||| | |||||||| | || ||||||||||||||||||||||||||||| ||| ||||||    
T  12799292 gggttgttaaatttctaagcttacttaattcatgagtttctctagattagttacaaactctccctataaaaggagagttcacctagtt 12799379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 20506524 - 20506465
Alignment:
Q  126 ttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctc 185  Q
    ||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  20506524 ttactcaattcttaagtgtctccagatcagttgcaaactctccctataaaaggagagctc 20506465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 22610394 - 22610332
Alignment:
Q  16 gattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  22610394 gattgagaatctaactgaattttctatctttccttcattagtttgttccatctaattttgtgg 22610332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 12799167 - 12799239
Alignment:
Q  6 gttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    ||||| ||| |||| ||||||||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  12799167 gttgtaataagatttagaatccaacataatttcctatctttcattcattagtttgtttcatctaattttgtgg 12799239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 2862979 - 2863014
Alignment:
Q  255 ttgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||||||||||| |||||||||||||||||||||||    
T  2862979 ttgacttgtgttaacgagtctttcttctcttcatct 2863014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 2882283 - 2882318
Alignment:
Q  255 ttgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||||||||||| |||||||||||||||||||||||    
T  2882283 ttgacttgtgttaacgagtctttcttctcttcatct 2882318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 17281289 - 17281320
Alignment:
Q  155 gttacaaactctccctataaaaggagagctca 186  Q
    ||||||||||||||||||||||||||||||||    
T  17281289 gttacaaactctccctataaaaggagagctca 17281320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 16760980 - 16760938
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  16760980 tctcttctccctcttttgacttgtgttgacgagtctttcttct 16760938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 19772508 - 19772550
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  19772508 tctcttctccctcttttgacttgtgttgacgagtctttcttct 19772550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 22806949 - 22806907
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  22806949 tctcttctccctcttttgacttgtgttgacgagtctttcttct 22806907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 22949830 - 22949788
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  22949830 tctcttctccctcttttgacttgtgttgacgagtctttcttct 22949788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 22953786 - 22953744
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  22953786 tctcttctccctcttttgacttgtgttgacgagtctttcttct 22953744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 23872274 - 23872232
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  23872274 tctcttctccctcttttgacttgtgttgacgagtctttcttct 23872232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 23876230 - 23876188
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  23876230 tctcttctccctcttttgacttgtgttgacgagtctttcttct 23876188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Original strand, 5600695 - 5600724
Alignment:
Q  155 gttacaaactctccctataaaaggagagct 184  Q
    ||||||||||||||||||||||||||||||    
T  5600695 gttacaaactctccctataaaaggagagct 5600724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 26981193 - 26981148
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttctctt 285  Q
    ||||||||||| || | ||||||| |||||||||||||||||||||    
T  26981193 tctcttctccctttttcgacttgtcttgacgagtctttcttctctt 26981148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 17600028 - 17599980
Alignment:
Q  202 acaccaaagagtttc-attgagttgtcggaaactccttctctcttctcc 249  Q
    |||| |||||||||| |||||||||||| |||||| |||||||||||||    
T  17600028 acactaaagagtttctattgagttgtcgaaaactctttctctcttctcc 17599980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 290
Target Start/End: Original strand, 145746 - 145945
Alignment:
Q  91 cttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatcta 190  Q
    |||||||| || || |||||||||| |||||||||| | |||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||| |||    
T  145746 cttgagctgatatgtgggttgcttagtttttaagttcagttaatttttaagtttctccaaattagttacaatctctctctataaaaggagagctcaccta 145845  T
Q  191 gttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||        |||||||||||||  ||||||||||||  ||||| |||||||||||||| || |||||||||| ||||||||||||||| |||||||||    
T  145846 gttcaaaaatcacaccaaagagttctattgagttgtcgataactctttctctcttctccctttcttgacttgtgctgacgagtctttcttttcttcatct 145945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 127001 - 126959
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  127001 tctcttctccctcttttgacttgtgttgacgagtctttcttct 126959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 147703 - 147871
Alignment:
Q  79 attagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaagg 178  Q
    ||||||||||| ||||||||||| || | |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  147703 attagtttgttacttgagcttatctgtgagttgcttaatttttaagtttacctaattcttaagtttctccaaattagttacaaactctccatataaaagg 147802  T
Q  179 agagctcatctagttnnnnnnntacaccaaagagtttc-attgagttgtcggaaactccttctctcttc 246  Q
    |||||||| ||||||        ||||||||||||||| ||||| ||||||  ||||| || |||||||    
T  147803 agagctcacctagttcaaaaatcacaccaaagagtttctattgaattgtcgagaactctttatctcttc 147871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 147606 - 147676
Alignment:
Q  7 ttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtg 77  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  147606 ttgtgataagattgagaatccaactgaatttcctatttttccttcattagtttgtttcatctaatcttgtg 147676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 22714306 - 22714456
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||||||||||| |||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  22714306 gattagtttgttacttgagctgatctgtgggttgcttaatttctaagtttacttaattcttaagtttctccaaattatttacaaactccccctataaaag 22714405  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcg 228  Q
    |||||||||  |||||       ||||| ||||||||  ||||||||||||    
T  22714406 gagagctcacatagttcaaaaattacacaaaagagttctattgagttgtcg 22714456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 7002434 - 7002262
Alignment:
Q  78 gattagtttgtttcttgagcttatttgagggttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaag 177  Q
    |||| ||||||| |||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||| || |||||||||    
T  7002434 gattcgtttgttacttgagctgatttgtgggttgcgtaatttttaagtttacttaattattaagtttctccaaattatttacaaactatctctataaaag 7002335  T
Q  178 gagagctcatctagttnnnnnnntacaccaaagagtttcattgagttgtcggaaactccttctctcttctccc 250  Q
    ||||||||| ||||||       || || ||||||||  ||||||||||||  ||||| |||||| |||||||    
T  7002334 gagagctcacctagttcaaaaaatatacaaaagagttctattgagttgtcgagaactctttctctgttctccc 7002262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 38181677 - 38181766
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  38181677 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 38181766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 33417191 - 33417101
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctca 292  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  33417191 acactaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctca 33417101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 1910389 - 1910478
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  1910389 acaccaaagagtttcattgagttgtcgggaactctttctctcttcttcctttcttgacttgtgttgacgagtctttcttctcttcatctc 1910478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 17021012 - 17020923
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  17021012 acaccaaagagtttcattaagttgtcggaaactctttctctcttctcccttttttgacttgtgttgacgattctttcttctcttcatctc 17020923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 17551449 - 17551360
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  17551449 acaccaaagagtttcattaagttgtcggaaactctttctctcttctcccttttttgacttgtgttgacgattctttcttctcttcatctc 17551360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 40125330 - 40125419
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  40125330 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacaagtctttcttctcttcatctc 40125419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 44925360 - 44925445
Alignment:
Q  206 caaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  44925360 caaagagtttcattgagttgtcggaaactctttctctcttctccctttcttgacttgtgttgacgagtctttattctcttcatctc 44925445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 19167308 - 19167219
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    ||||||||||||||||||||||||| || ||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  19167308 acaccaaagagtttcattgagttgttgggaactctttatctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 19167219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 15950987 - 15951076
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||| ||||||| ||||| ||||    
T  15950987 acaccaaagaatttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagcctttcttttcttcttctc 15951076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 18875823 - 18875912
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||||| | || || |||||||||||||| |||||||||||||||||||    
T  18875823 acaccatagagtttcattgagttgtcgggaactctttctctcttctctctttcttaacttgtgttgacgaatctttcttctcttcatctc 18875912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 1808107 - 1808018
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||| |||||||||||||||| || ||||| || ||||||||||  || |||||||||||||||||||||||||||| ||||||||    
T  1808107 acaccaaaaagtttcattgagttgttgggaactctttatctcttctccatttcttgacttgtgttgacgagtctttcttctattcatctc 1808018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 17953408 - 17953497
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||  ||||||||||||  ||||| |||||||||||||| || ||||||||||||||||| ||||| |||||||||||||    
T  17953408 acaccaaagagttctattgagttgtcgagaactctttctctcttctccctttcttgacttgtgttgacgaatctttattctcttcatctc 17953497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 17953339 - 17953402
Alignment:
Q  3 tttgttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaa 66  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17953339 tttgttgcgataatattgagaatccaactgaatttcctatctttccttcattagtttgtttcaa 17953402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 15875132 - 15875215
Alignment:
Q  207 aaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    ||||||||  ||||||||||||  ||||  |||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  15875132 aaagagttctattgagttgtcgataactttttctctcttctcactttcttgacttgtgttgacgagtctttcttctcttcatct 15875215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 36684230 - 36684157
Alignment:
Q  217 attgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatct 290  Q
    |||||| |||||| ||||| |||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  36684230 attgagatgtcgggaactctttctcttttctccctttattgatttgtgttgacgagtcttttttctcttcatct 36684157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 17026579 - 17026499
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||         |||||| || || |||||||||||||||||||||||||||||||||||||    
T  17026579 acaccaaagagtttcattgagttgtcgggaa---------tcttcttcctttcttgacttgtgttgacgagtctttcttctcttcatctc 17026499  T

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Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 17557071 - 17556991
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||         |||||| || || |||||||||||||||||||||||||||||||||||||    
T  17557071 acaccaaagagtttcattgagttgtcgggaa---------tcttcttcctttcttgacttgtgttgacgagtctttcttctcttcatctc 17556991  T

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Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 28864191 - 28864119
Alignment:
Q  6 gttgtgatatgattgagaatccaactgaatttcctatctttccttcattagtttgtttcaactaatcttgtgg 78  Q
    |||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||||| | ||||| ||||||    
T  28864191 gttgtgataatattgagaattcaattgaatttcatatctttccttcattagtttgttttatctaattttgtgg 28864119  T

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Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 28864066 - 28864017
Alignment:
Q  108 gttgcttaatttttaagtttacttaattcttaagtttctccaaatcagtt 157  Q
    ||||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  28864066 gttgcttaatttttaagtttacttaattcctaagttactccaaattagtt 28864017  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 18862066 - 18862108
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  18862066 tctcttctccctcttttgacttgtgttgacgagtctttcttct 18862108  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 21384342 - 21384300
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  21384342 tctcttctccctcttttgacttgtgttgacgagtctttcttct 21384300  T

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Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 21387762 - 21387720
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  21387762 tctcttctccctcttttgacttgtgttgacgagtctttcttct 21387720  T

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Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 21827435 - 21827477
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  21827435 tctcttctccctcttttgacttgtgttgacgagtctttcttct 21827477  T

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Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 23915090 - 23915048
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  23915090 tctcttctccctcttttgacttgtgttgacgagtctttcttct 23915048  T

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Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 42157617 - 42157647
Alignment:
Q  161 aactctccctataaaaggagagctcatctag 191  Q
    |||||||||||||||||||||||||||||||    
T  42157617 aactctccctataaaaggagagctcatctag 42157647  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 10933839 - 10933806
Alignment:
Q  259 cttgtgttgacgagtctttcttctcttcatctca 292  Q
    ||||||||||||||| ||||||||||||||||||    
T  10933839 cttgtgttgacgagtttttcttctcttcatctca 10933806  T

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Target: scaffold0002 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 4724 - 4635
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  4724 acaccaaagagtttcattgagttgtcgggaactctttctctcttctccctttcttgacttgtgttgacgagtctttcttctcttcatctc 4635  T

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Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 443378 - 443467
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||| | ||||||| || |||||||||||| || |||||||||| ||||||||||    
T  443378 acaccaaagagtttcattgagttgtcgggaactctttctattttctccctttcttgacttgtgttaacaagtctttcttgtcttcatctc 443467  T

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Target: scaffold0002; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 151046 - 150961
Alignment:
Q  108 gttgcttaatttttaagtttacttaattcttaagtttctccaaatcagttacaaactctccctataaaaggagagctcatctagtt 193  Q
    |||| ||||||||||||||||||||| ||||||||||||||| || | | |  |||||||||||||||||||||||||| ||||||    
T  151046 gttgtttaatttttaagtttacttaactcttaagtttctccagattaatcatgaactctccctataaaaggagagctcacctagtt 150961  T

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Target: scaffold0002; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 140426 - 140386
Alignment:
Q  108 gttgcttaat-ttttaagtttacttaattcttaagtttctc 147  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  140426 gttgcttaatatttttagtttacttaattcttaagtttctc 140386  T

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Target: scaffold0352 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 7767 - 7678
Alignment:
Q  202 acaccaaagagtttcattgagttgtcggaaactccttctctcttctcccattattgacttgtgttgacgagtctttcttctcttcatctc 291  Q
    |||||||||||||||||||||||||||| ||||| |||||| ||||||| || |||||||||||||||||||| ||||| ||||||||||    
T  7767 acaccaaagagtttcattgagttgtcgggaactctttctcttttctccctttcttgacttgtgttgacgagtcgttcttatcttcatctc 7678  T

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Target: scaffold0575 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0575
Description:

Target: scaffold0575; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 5377 - 5419
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  5377 tctcttctccctcttttgacttgtgttgacgagtctttcttct 5419  T

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Target: scaffold0572 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 10472 - 10514
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  10472 tctcttctccctcttttgacttgtgttgacgagtctttcttct 10514  T

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Target: scaffold0452 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 12464 - 12506
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  12464 tctcttctccctcttttgacttgtgttgacgagtctttcttct 12506  T

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Target: scaffold0431 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 14973 - 15015
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  14973 tctcttctccctcttttgacttgtgttgacgagtctttcttct 15015  T

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Target: scaffold0415 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 1086 - 1044
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  1086 tctcttctccctcttttgacttgtgttgacgagtctttcttct 1044  T

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Target: scaffold0292 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 7765 - 7723
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  7765 tctcttctccctcttttgacttgtgttgacgagtctttcttct 7723  T

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Target: scaffold0232 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 11792 - 11750
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  11792 tctcttctccctcttttgacttgtgttgacgagtctttcttct 11750  T

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Target: scaffold0229 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 10922 - 10964
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  10922 tctcttctccctcttttgacttgtgttgacgagtctttcttct 10964  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 32081 - 32123
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  32081 tctcttctccctcttttgacttgtgttgacgagtctttcttct 32123  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 13508 - 13550
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  13508 tctcttctccctcttttgacttgtgttgacgagtctttcttct 13550  T

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Target: scaffold0124 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 21482 - 21524
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  21482 tctcttctccctcttttgacttgtgttgacgagtctttcttct 21524  T

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Target: scaffold0096 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 22307 - 22265
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  22307 tctcttctccctcttttgacttgtgttgacgagtctttcttct 22265  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 121164 - 121122
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  121164 tctcttctccctcttttgacttgtgttgacgagtctttcttct 121122  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 35507 - 35549
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  35507 tctcttctccctcttttgacttgtgttgacgagtctttcttct 35549  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 21905 - 21863
Alignment:
Q  240 tctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  21905 tctcttctccctcttttgacttgtgttgacgagtctttcttct 21863  T

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Target: scaffold0327 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 19715 - 19760
Alignment:
Q  237 ttctctcttctcccattattgacttgtgttgacgagtctttcttct 282  Q
    |||||||||||||| || | ||||||||||||||||||||| ||||    
T  19715 ttctctcttctccctttttcgacttgtgttgacgagtctttattct 19760  T

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