View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2492_low_15 (Length: 286)
Name: NF2492_low_15
Description: NF2492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2492_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 25247634 - 25247892
Alignment:
| Q |
18 |
atgttatcgttgggatttcgagacgaaagtgttacttggaagttggaggttaagaaatttggttgtgatgcgttgaaagcatatagggttacatctaaga |
117 |
Q |
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| T |
25247634 |
atgttatcgttgggatttcgagacgaaagtgttacttgaaagtttgaggttaagaaatttggttgtgatgcgttgaaagcatatagggttacatctaaga |
25247733 |
T |
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| Q |
118 |
ggatgaaagtaggttttgttggtcttaggattgcccatatgaggagaattgttagtaggactatgaagaggaataccatgattgcccaaaatattctttg |
217 |
Q |
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| T |
25247734 |
ggatgaaagtaggttttgttggtcttaggattgcccatatgaggagaattgttagtaggactaagaagaggaataccatgatggcccaaaatattctttg |
25247833 |
T |
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| Q |
218 |
gaagagtattctttttcttcctttgtggtgatcacactccttcaccgacatgatgatgt |
276 |
Q |
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| T |
25247834 |
gaagagtattctttttcttcctttgtggtgatcacactccttcaccgacatgatgatgt |
25247892 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 43076848 - 43077022
Alignment:
| Q |
16 |
caatgttatcgttgggatttcgagacgaaagtgttacttggaagttggaggttaagaaatttggttgtgatgcgttgaaagcatatagggttacatctaa |
115 |
Q |
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|||| |||||||||||||| || || |||| ||| |||||||| || ||||||||||||||||| || ||||||||||| || | || |||||| |
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| T |
43076848 |
caattttatcgttgggattacgtgaagaaactgtgacttggaaatttgaggttaagaaatttggaactgtggcgttgaaagcgtaaacagtgacatcttg |
43076947 |
T |
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| Q |
116 |
gaggatgaaagtaggttttgttggtcttaggattgcccatatgaggagaattgttagtaggactatgaagaggaa |
190 |
Q |
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| T |
43076948 |
gagaatgaaagaaggtttagaaggttttaagacagcccaaatgattaggattgttactaggacaatgaagaggaa |
43077022 |
T |
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